| SRR6320498 | carpel | wt | 8.75 | HC |
| SRR5560728 | caryopsis | wild_type | 19.76 | HC |
| SRR5560729 | caryopsis | wild_type | 39.90 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 29.30 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 39.81 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 18.72 | HC |
| SRR4947495 | root | control | 55.70 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 28.71 | HC |
| SRR7265400 | coleoptile | 2dA | 27.82 | HC |
| SRR7265401 | coleoptile | 2dA | 24.15 | HC |
| SRR7265402 | coleoptile | 2dA | 26.54 | HC |
| SRR7265403 | coleoptile | 2dN | 16.89 | HC |
| SRR7265404 | coleoptile | 2dN | 11.57 | HC |
| SRR7265405 | coleoptile | 2dN | 14.94 | HC |
| SRR7265406 | coleoptile | 3dA | 10.00 | HC |
| SRR7265407 | coleoptile | 3dA | 10.78 | HC |
| SRR7265408 | coleoptile | 3dA | 6.53 | HC |
| SRR7265409 | coleoptile | 3dN | 12.66 | HC |
| SRR7265410 | coleoptile | 3dN | 10.94 | HC |
| SRR7265411 | coleoptile | 3dN | 10.01 | HC |
| SRR7265413 | coleoptile | 4dA | 11.36 | HC |
| SRR7265414 | coleoptile | 4dA | 5.81 | HC |
| SRR7265415 | coleoptile | 4dN | 11.01 | HC |
| SRR7265416 | coleoptile | 4dN | 9.51 | HC |
| SRR7265417 | coleoptile | 4dN | 10.80 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 5.08 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 5.29 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 31.60 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 43.16 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 13.81 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 9.18 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 40.12 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 18.32 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 23.68 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 13.07 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 24.10 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 34.74 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 74.97 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 36.54 | HC |
| SRR7265388 | embryo | 12hA | 22.42 | HC |
| SRR7265389 | embryo | 12hA | 22.68 | HC |
| SRR7265390 | embryo | 12hA | 19.30 | HC |
| SRR7265391 | embryo | 12hN | 11.83 | HC |
| SRR7265392 | embryo | 12hN | 11.51 | HC |
| SRR7265393 | embryo | 12hN | 8.53 | HC |
| SRR7265394 | embryo | 24hA | 16.03 | HC |
| SRR7265395 | embryo | 24hA | 20.67 | HC |
| SRR7265396 | embryo | 24hA | 21.56 | HC |
| SRR7265397 | embryo | 24hN | 16.50 | HC |
| SRR7265398 | embryo | 24hN | 12.30 | HC |
| SRR7265399 | embryo | 24hN | 10.31 | HC |
| SRR2338867 | endosprem | control | 2.70 | HC |
| SRR2338868 | endosprem | high_temperature | 3.64 | HC |
| SRR1213690 | flower | wt(flower buds) | 24.36 | HC |
| SRR1213691 | flower | wt | 18.14 | HC |
| SRR8240824 | leaf | wild_type | 4.59 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 58.26 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 24.15 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 39.67 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 46.12 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 27.45 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 31.35 | HC |
| SRR5856927 | leaf | control | 2.56 | HC |
| SRR5856928 | leaf | control | 3.90 | HC |
| SRR5856929 | leaf | control | 4.43 | HC |
| SRR5856933 | leaf | control | 4.82 | HC |
| SRR5856934 | leaf | control | 3.60 | HC |
| SRR5856935 | leaf | control | 4.14 | HC |
| SRR6168973 | leaf | none (control) | 24.92 | HC |
| SRR6168974 | leaf | none (control) | 35.74 | HC |
| SRR6168975 | leaf | none (control) | 8.57 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 38.14 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 24.40 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 13.40 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 3.07 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 12.34 | HC |
| SRR5110429 | panicle | Dawn | 28.41 | HC |
| SRR5110430 | panicle | Dawn | 18.01 | HC |
| SRR5110431 | panicle | Dawn | 15.71 | HC |
| SRR5110432 | panicle | Dawn | 38.14 | HC |
| SRR4947496 | root | control | 56.43 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 17.75 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 7.49 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 9.37 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 20.39 | HC |
| SRR5110437 | panicle | Dawn + 7h | 18.97 | HC |
| SRR5110438 | panicle | Dawn + 7h | 23.14 | HC |
| SRR5110439 | panicle | Dawn + 7h | 10.86 | HC |
| SRR5110440 | panicle | Dawn + 7h | 29.07 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 15.26 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 20.90 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 13.28 | HC |
| SRR5110445 | panicle | Dusk | 7.21 | HC |
| SRR5110446 | panicle | Dusk | 35.13 | HC |
| SRR5110447 | panicle | Dusk | 33.09 | HC |
| SRR5110448 | panicle | Dusk | 36.88 | HC |
| SRR5110449 | panicle | Dawn + 14h | 8.55 | HC |
| SRR5110450 | panicle | Dawn + 14h | 7.49 | HC |
| SRR5110451 | panicle | Dawn + 14h | 17.03 | HC |
| SRR5110452 | panicle | Dawn + 14h | 34.83 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 21.03 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 15.68 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 18.97 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 37.26 | HC |
| SRR5110457 | panicle | Dawn + 21h | 19.47 | HC |
| SRR5110458 | panicle | Dawn + 21h | 7.76 | HC |
| SRR5110459 | panicle | Dawn + 21h | 38.43 | HC |
| SRR5110460 | panicle | Dawn + 21h | 13.16 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.62 | HC |
| SRR1633182 | panicle | WT | 210.95 | HC |
| SRR1633185 | panicle | WT | 343.98 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 6.09 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 9.70 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 18.10 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 24.56 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 62.33 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 48.81 | HC |
| SRR5126147 | root | "mock,1_day" | 25.03 | HC |
| SRR5126148 | root | "mock,1_day" | 18.50 | HC |
| SRR5126149 | root | "mock,1_day" | 12.91 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 24.41 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 18.96 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 43.80 | HC |
| SRR5126153 | root | "mock,7_days" | 23.68 | HC |
| SRR5126155 | root | "mock,7_days" | 15.10 | HC |
| SRR5126157 | root | "mock,7_days" | 11.57 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 41.49 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 26.42 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 38.59 | HC |
| SRR5126165 | root | "mock,14_days" | 16.88 | HC |
| SRR5126167 | root | "mock,14_days" | 12.76 | HC |
| SRR5126169 | root | "mock,14_days" | 18.87 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 28.48 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 32.34 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 23.37 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 14.87 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 5.15 | HC |
| SRR4947478 | root | control | 40.47 | HC |
| SRR4947479 | root | control | 35.24 | HC |
| SRR4947480 | root | control | 75.10 | HC |
| SRR4947481 | root | control | 71.82 | HC |
| SRR4947482 | root | Al | 23.78 | HC |
| SRR4947483 | root | Al | 29.72 | HC |
| SRR4947484 | root | Al | 77.29 | HC |
| SRR4947485 | root | Al | 57.31 | HC |
| SRR4947487 | root | control | 39.58 | HC |
| SRR4947488 | root | control | 42.29 | HC |
| SRR4947489 | root | control | 67.81 | HC |
| SRR4947490 | root | Al | 41.64 | HC |
| SRR4947491 | root | Al | 40.42 | HC |
| SRR4947492 | root | Al | 71.06 | HC |
| SRR4947493 | root | Al | 77.52 | HC |
| SRR4947494 | root | control | 50.27 | HC |
| SRR4947497 | root | control | 77.58 | HC |
| SRR4947498 | root | Al | 63.78 | HC |
| SRR4947499 | root | Al | 56.81 | HC |
| SRR4947500 | root | Al | 63.14 | HC |
| SRR4947501 | root | Al | 92.83 | HC |
| SRR4947502 | root | control | 45.66 | HC |
| SRR4947503 | root | control | 38.51 | HC |
| SRR4947504 | root | control | 68.72 | HC |
| SRR4947505 | root | control | 81.10 | HC |
| SRR4947506 | root | Al | 32.79 | HC |
| SRR4947507 | root | Al | 50.35 | HC |
| SRR4947508 | root | Al | 52.18 | HC |
| SRR4947509 | root | Al | 97.04 | HC |
| SRR6502091 | root | 100 mM NaCl | 11.61 | HC |
| SRR6502092 | root | 100 mM NaCl | 14.58 | HC |
| SRR6502093 | root | 100 mM NaCl | 14.61 | HC |
| SRR6502094 | root | control | 16.11 | HC |
| SRR6502095 | root | control | 20.09 | HC |
| SRR6502096 | root | control | 20.04 | HC |
| SRR6502103 | root | 100 mM NaCl | 20.31 | HC |
| SRR6502104 | root | 100 mM NaCl | 18.59 | HC |
| SRR6502105 | root | 100 mM NaCl | 14.06 | HC |
| SRR6502106 | root | control | 14.11 | HC |
| SRR6502107 | root | control | 20.59 | HC |
| SRR6502108 | root | control | 35.15 | HC |
| SRR1740436 | root_differentiation_zone | wt | 11.13 | HC |
| SRR1740432 | root_elongation_zone | wt | 22.52 | HC |
| SRR1740433 | root_elongation_zone | wt | 19.69 | HC |
| SRR1740428 | root_meristematic_zone | wt | 16.66 | HC |
| SRR1740429 | root_meristematic_zone | wt | 23.14 | HC |
| SRR1740430 | root_meristematic_zone | wt | 26.68 | HC |
| SRR6441554 | seedling | wild_type | 3.20 | HC |
| SRR6441555 | seedling | wild_type | 4.30 | HC |
| SRR2154086 | seedling | wt | 29.84 | HC |
| SRR2154082 | seedling | wt | 23.87 | HC |
| SRR2154083 | seedling | wt | 25.84 | HC |
| SRR2154084 | seedling | wt | 22.48 | HC |
| SRR2154085 | seedling | wt | 28.22 | HC |
| SRR2154087 | seedling | wt | 26.34 | HC |
| SRR3098742 | seedling | wt | 8.63 | HC |
| SRR3098743 | seedling | wt | 7.74 | HC |
| SRR2857719 | seedling | drought_stress_0h | 19.04 | HC |
| SRR2857720 | seedling | drought_stress_1h | 18.00 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.59 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 7.32 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.80 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 14.13 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 6.09 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 7.03 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.44 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.97 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.65 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.96 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.09 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.29 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 7.61 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 8.87 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 200.42 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 198.25 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 207.32 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 201.18 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 208.97 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 212.04 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 192.38 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 185.32 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 179.21 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 200.73 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 166.81 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 174.14 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 207.47 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 174.89 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 189.96 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 202.06 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 170.42 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 218.10 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 207.44 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 193.40 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 221.07 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 206.53 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 252.65 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 37.91 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 37.07 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 43.48 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 20.32 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 54.62 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 45.78 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 58.39 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 112.93 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 96.18 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 102.62 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 86.46 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 77.32 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 80.67 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 137.36 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 126.91 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 124.67 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 10.41 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 5.60 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 9.80 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 7.45 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 7.54 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 4.29 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 10.51 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 6.29 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 7.03 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 6.32 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 9.86 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 6.87 | HC |