| SRR358795 | callus | wt | 19.41 | HC |
| SRR358796 | callus | wt | 22.16 | HC |
| SRR358797 | callus | wt | 20.32 | HC |
| SRR358798 | callus | wt | 21.84 | HC |
| SRR6320473 | carpel | wt | 12.13 | HC |
| SRR6320498 | carpel | wt | 11.08 | HC |
| SRR5560727 | caryopsis | wild_type | 33.60 | HC |
| SRR5560728 | caryopsis | wild_type | 25.27 | HC |
| SRR5560729 | caryopsis | wild_type | 29.36 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 7.27 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 6.55 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 7.28 | HC |
| SRR7265400 | coleoptile | 2dA | 4.73 | HC |
| SRR7265401 | coleoptile | 2dA | 4.54 | HC |
| SRR7265402 | coleoptile | 2dA | 4.54 | HC |
| SRR7265403 | coleoptile | 2dN | 9.24 | HC |
| SRR7265404 | coleoptile | 2dN | 9.25 | HC |
| SRR7265405 | coleoptile | 2dN | 8.15 | HC |
| SRR7265406 | coleoptile | 3dA | 3.82 | HC |
| SRR7265407 | coleoptile | 3dA | 3.41 | HC |
| SRR7265409 | coleoptile | 3dN | 5.45 | HC |
| SRR7265410 | coleoptile | 3dN | 4.87 | HC |
| SRR7265411 | coleoptile | 3dN | 5.39 | HC |
| SRR7265412 | coleoptile | 4dA | 3.96 | HC |
| SRR7265413 | coleoptile | 4dA | 5.45 | HC |
| SRR7265415 | coleoptile | 4dN | 5.17 | HC |
| SRR7265416 | coleoptile | 4dN | 6.16 | HC |
| SRR7265417 | coleoptile | 4dN | 6.49 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 4.76 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 9.48 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 9.74 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 12.30 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 15.79 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 12.35 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 9.66 | HC |
| SRR7265373 | embryo | dry seed 0 h | 5.85 | HC |
| SRR7265374 | embryo | dry seed 0 h | 6.56 | HC |
| SRR7265375 | embryo | dry seed 0 h | 2.26 | HC |
| SRR7265377 | embryo | 1hA | 4.46 | HC |
| SRR7265378 | embryo | 1hA | 5.47 | HC |
| SRR7265379 | embryo | 1hN | 4.89 | HC |
| SRR7265380 | embryo | 1hN | 4.84 | HC |
| SRR7265381 | embryo | 1hN | 5.79 | HC |
| SRR7265382 | embryo | 3hA | 7.97 | HC |
| SRR7265383 | embryo | 3hA | 6.75 | HC |
| SRR7265384 | embryo | 3hA | 6.82 | HC |
| SRR7265385 | embryo | 3hN | 4.90 | HC |
| SRR7265386 | embryo | 3hN | 4.52 | HC |
| SRR7265387 | embryo | 3hN | 4.44 | HC |
| SRR7265388 | embryo | 12hA | 12.37 | HC |
| SRR7265389 | embryo | 12hA | 12.64 | HC |
| SRR7265390 | embryo | 12hA | 11.70 | HC |
| SRR7265391 | embryo | 12hN | 17.27 | HC |
| SRR7265392 | embryo | 12hN | 14.58 | HC |
| SRR7265393 | embryo | 12hN | 16.79 | HC |
| SRR7265394 | embryo | 24hA | 7.54 | HC |
| SRR7265395 | embryo | 24hA | 10.79 | HC |
| SRR7265396 | embryo | 24hA | 8.25 | HC |
| SRR7265397 | embryo | 24hN | 11.69 | HC |
| SRR7265398 | embryo | 24hN | 12.09 | HC |
| SRR7265399 | embryo | 24hN | 10.19 | HC |
| SRR2338867 | endosprem | control | 3.40 | HC |
| SRR2338868 | endosprem | high_temperature | 4.40 | HC |
| SRR2338869 | endosprem | high_temperature | 7.06 | HC |
| SRR1213690 | flower | wt(flower buds) | 12.25 | HC |
| SRR1213691 | flower | wt | 12.04 | HC |
| SRR8240824 | leaf | wild_type | 2.78 | HC |
| SRR8240825 | leaf | wild_type | 3.25 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 5.29 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 5.15 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 5.06 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.96 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.16 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 10.11 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.04 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.14 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.63 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.71 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 10.09 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.83 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 11.50 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 11.97 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 7.39 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.14 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.82 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.11 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.79 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.66 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.36 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.74 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 15.76 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 7.43 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.45 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.51 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.17 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.67 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 12.42 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 11.43 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 9.72 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 6.88 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 12.35 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 12.42 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 6.86 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 12.35 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 12.42 | HC |
| SRR1761528 | leaf | drought | 6.86 | HC |
| SRR1761530 | leaf | control | 12.35 | HC |
| SRR1761531 | leaf | control | 12.42 | HC |
| SRR504365 | leaf | wt | 12.50 | HC |
| SRR8611900 | leaf | Non-inoculated | 5.65 | HC |
| SRR8611901 | leaf | Non-inoculated | 6.42 | HC |
| SRR8611902 | leaf | Non-inoculated | 6.87 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 4.37 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 4.12 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 4.96 | HC |
| SRR1213692 | leaf | wt | 8.83 | HC |
| SRR1213693 | leaf | wt | 4.06 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 5.64 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 7.63 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 6.58 | HC |
| SRR6502088 | leaf | control | 4.39 | HC |
| SRR6502089 | leaf | control | 4.72 | HC |
| SRR6502090 | leaf | control | 4.57 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 7.76 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 6.72 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 4.93 | HC |
| SRR6502100 | leaf | control | 4.52 | HC |
| SRR5856927 | leaf | control | 4.32 | HC |
| SRR5856928 | leaf | control | 3.93 | HC |
| SRR5856929 | leaf | control | 4.63 | HC |
| SRR5856930 | leaf | salt | 2.01 | HC |
| SRR5856933 | leaf | control | 5.35 | HC |
| SRR5856934 | leaf | control | 5.70 | HC |
| SRR5856935 | leaf | control | 5.08 | HC |
| SRR5856936 | leaf | salt | 2.37 | HC |
| SRR5856937 | leaf | salt | 2.32 | HC |
| SRR5856938 | leaf | salt | 2.17 | HC |
| SRR6168973 | leaf | none (control) | 10.63 | HC |
| SRR6168974 | leaf | none (control) | 9.73 | HC |
| SRR6168975 | leaf | none (control) | 11.82 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 18.52 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 3.41 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 13.51 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.84 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 3.92 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 4.13 | HC |
| SRR8582888 | panicle | AM | 3.89 | HC |
| SRR8582889 | panicle | AM | 2.03 | HC |
| SRR8582890 | panicle | AM | 3.82 | HC |
| SRR8582891 | panicle | PM | 10.08 | HC |
| SRR8582892 | panicle | PM | 16.06 | HC |
| SRR8582893 | panicle | PM | 8.83 | HC |
| SRR4947496 | root | control | 17.49 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 5.75 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 3.43 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.84 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.97 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.93 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 7.60 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 14.91 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 13.35 | HC |
| SRR5126147 | root | "mock,1_day" | 12.04 | HC |
| SRR5126148 | root | "mock,1_day" | 8.03 | HC |
| SRR5126149 | root | "mock,1_day" | 16.79 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 17.40 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 20.44 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 11.78 | HC |
| SRR5126153 | root | "mock,7_days" | 9.46 | HC |
| SRR5126155 | root | "mock,7_days" | 15.41 | HC |
| SRR5126157 | root | "mock,7_days" | 19.24 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 17.64 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 17.22 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 19.00 | HC |
| SRR5126165 | root | "mock,14_days" | 15.52 | HC |
| SRR5126167 | root | "mock,14_days" | 13.17 | HC |
| SRR5126169 | root | "mock,14_days" | 16.95 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 17.01 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 21.40 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 25.07 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.88 | HC |
| SRR1213694 | root | wt | 9.61 | HC |
| SRR4947480 | root | control | 25.46 | HC |
| SRR4947481 | root | control | 32.29 | HC |
| SRR4947484 | root | Al | 18.48 | HC |
| SRR4947485 | root | Al | 18.89 | HC |
| SRR4947488 | root | control | 19.41 | HC |
| SRR4947489 | root | control | 22.17 | HC |
| SRR4947492 | root | Al | 20.74 | HC |
| SRR4947493 | root | Al | 16.14 | HC |
| SRR4947497 | root | control | 19.76 | HC |
| SRR4947500 | root | Al | 19.79 | HC |
| SRR4947501 | root | Al | 23.34 | HC |
| SRR4947504 | root | control | 27.58 | HC |
| SRR4947505 | root | control | 30.21 | HC |
| SRR4947508 | root | Al | 18.02 | HC |
| SRR4947509 | root | Al | 15.52 | HC |
| SRR6502091 | root | 100 mM NaCl | 10.25 | HC |
| SRR6502092 | root | 100 mM NaCl | 12.12 | HC |
| SRR6502093 | root | 100 mM NaCl | 13.82 | HC |
| SRR6502094 | root | control | 6.03 | HC |
| SRR6502095 | root | control | 7.44 | HC |
| SRR6502096 | root | control | 5.46 | HC |
| SRR6502103 | root | 100 mM NaCl | 9.61 | HC |
| SRR6502104 | root | 100 mM NaCl | 10.88 | HC |
| SRR6502105 | root | 100 mM NaCl | 11.05 | HC |
| SRR6502106 | root | control | 8.11 | HC |
| SRR6502107 | root | control | 6.86 | HC |
| SRR6502108 | root | control | 8.03 | HC |
| SRR6441554 | seedling | wild_type | 5.60 | HC |
| SRR6441555 | seedling | wild_type | 3.89 | HC |
| SRR2154086 | seedling | wt | 7.68 | HC |
| SRR2154082 | seedling | wt | 10.86 | HC |
| SRR2154083 | seedling | wt | 13.63 | HC |
| SRR2154084 | seedling | wt | 5.37 | HC |
| SRR2154085 | seedling | wt | 12.57 | HC |
| SRR2154087 | seedling | wt | 5.51 | HC |
| SRR3098741 | seedling | wt | 3.17 | HC |
| SRR3098743 | seedling | wt | 4.56 | HC |
| SRR2857719 | seedling | drought_stress_0h | 11.45 | HC |
| SRR2857720 | seedling | drought_stress_1h | 6.80 | HC |
| SRR2857721 | seedling | drought_stress_6h | 5.31 | HC |
| SRR358791 | seedling | wt | 8.84 | HC |
| SRR358792 | seedling | wt | 9.10 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.86 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 4.01 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.61 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.12 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 5.19 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 5.07 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.64 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.19 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.60 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.04 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.67 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 4.62 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.29 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.04 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.57 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 8.61 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 12.06 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 12.19 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 8.58 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 7.67 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 19.25 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 20.35 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 18.96 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 15.89 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 22.38 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 20.95 | HC |