| SRR5560727 | caryopsis | wild_type | 9.45 | HC |
| SRR5560728 | caryopsis | wild_type | 11.91 | HC |
| SRR5560729 | caryopsis | wild_type | 8.70 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 4.10 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 5.66 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 10.71 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 14.10 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 7.40 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 15.00 | HC |
| SRR2338867 | endosprem | control | 2.64 | HC |
| SRR2338868 | endosprem | high_temperature | 5.26 | HC |
| SRR2338869 | endosprem | high_temperature | 5.01 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 5.81 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.54 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.74 | HC |
| SRR8611901 | leaf | Non-inoculated | 3.75 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.38 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 7.58 | HC |
| SRR6168973 | leaf | none (control) | 5.59 | HC |
| SRR6168974 | leaf | none (control) | 5.01 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 21.48 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 10.94 | HC |
| SRR4947496 | root | control | 17.76 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 3.42 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.08 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.08 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 20.44 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 26.42 | HC |
| SRR5126147 | root | "mock,1_day" | 4.32 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 6.60 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 5.40 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 5.99 | HC |
| SRR5126155 | root | "mock,7_days" | 5.70 | HC |
| SRR5126157 | root | "mock,7_days" | 6.61 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 6.82 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 9.15 | HC |
| SRR5126169 | root | "mock,14_days" | 7.25 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 6.97 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 3.19 | HC |
| SRR1213694 | root | wt | 4.44 | HC |
| SRR4947480 | root | control | 20.36 | HC |
| SRR4947481 | root | control | 23.31 | HC |
| SRR4947484 | root | Al | 17.90 | HC |
| SRR4947485 | root | Al | 18.32 | HC |
| SRR4947488 | root | control | 17.29 | HC |
| SRR4947489 | root | control | 21.42 | HC |
| SRR4947492 | root | Al | 17.19 | HC |
| SRR4947493 | root | Al | 15.26 | HC |
| SRR4947497 | root | control | 25.00 | HC |
| SRR4947500 | root | Al | 15.52 | HC |
| SRR4947501 | root | Al | 28.79 | HC |
| SRR4947504 | root | control | 21.31 | HC |
| SRR4947505 | root | control | 27.48 | HC |
| SRR4947508 | root | Al | 13.30 | HC |
| SRR4947509 | root | Al | 17.53 | HC |
| SRR6502091 | root | 100 mM NaCl | 7.24 | HC |
| SRR6502092 | root | 100 mM NaCl | 13.45 | HC |
| SRR6502093 | root | 100 mM NaCl | 10.03 | HC |
| SRR6502094 | root | control | 9.35 | HC |
| SRR6502095 | root | control | 10.22 | HC |
| SRR6502096 | root | control | 8.80 | HC |
| SRR6502103 | root | 100 mM NaCl | 8.66 | HC |
| SRR6502104 | root | 100 mM NaCl | 11.64 | HC |
| SRR6502105 | root | 100 mM NaCl | 15.65 | HC |
| SRR6502106 | root | control | 8.11 | HC |
| SRR6502107 | root | control | 7.27 | HC |
| SRR6502108 | root | control | 8.08 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.28 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.03 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 9.52 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 20.25 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.85 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 31.88 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 23.96 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 33.41 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 54.40 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 44.42 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 45.18 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 38.98 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 29.79 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 28.61 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 20.19 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 24.86 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 23.45 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 33.48 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 41.53 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 37.89 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 42.53 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 56.24 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 34.36 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 41.64 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 37.74 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 46.17 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 47.93 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 52.14 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 6.87 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 7.03 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 6.79 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 11.13 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 10.53 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 10.05 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 9.43 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 10.72 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 9.19 | HC |