| SRR358795 | callus | wt | 9.89 | HC |
| SRR358796 | callus | wt | 11.60 | HC |
| SRR358797 | callus | wt | 10.42 | HC |
| SRR358798 | callus | wt | 10.85 | HC |
| SRR6320473 | carpel | wt | 7.41 | HC |
| SRR6320498 | carpel | wt | 9.83 | HC |
| SRR5560727 | caryopsis | wild_type | 5.89 | HC |
| SRR5560728 | caryopsis | wild_type | 6.37 | HC |
| SRR5560729 | caryopsis | wild_type | 7.93 | HC |
| SRR4947495 | root | control | 8.79 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 4.32 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 6.70 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 21.09 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 15.43 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 17.74 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 18.38 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 17.83 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 4.37 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 20.10 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 18.19 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 9.72 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 22.16 | HC |
| SRR7265373 | embryo | dry seed 0 h | 4.34 | HC |
| SRR7265374 | embryo | dry seed 0 h | 4.87 | HC |
| SRR7265376 | embryo | 1hA | 3.75 | HC |
| SRR7265378 | embryo | 1hA | 3.80 | HC |
| SRR7265379 | embryo | 1hN | 4.00 | HC |
| SRR7265380 | embryo | 1hN | 4.56 | HC |
| SRR7265381 | embryo | 1hN | 4.56 | HC |
| SRR7265386 | embryo | 3hN | 4.16 | HC |
| SRR7265387 | embryo | 3hN | 3.83 | HC |
| SRR7265391 | embryo | 12hN | 5.18 | HC |
| SRR1213690 | flower | wt(flower buds) | 9.84 | HC |
| SRR1213691 | flower | wt | 10.21 | HC |
| SRR8060835 | leaf | wild_type | 14.00 | HC |
| SRR8060836 | leaf | wild_type | 7.22 | HC |
| SRR8060837 | leaf | wild_type | 12.76 | HC |
| SRR504365 | leaf | wt | 5.32 | HC |
| SRR8611900 | leaf | Non-inoculated | 5.40 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.63 | HC |
| SRR8611902 | leaf | Non-inoculated | 4.37 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 4.50 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 4.65 | HC |
| SRR1213692 | leaf | wt | 6.60 | HC |
| SRR1213693 | leaf | wt | 6.03 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 7.57 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 5.31 | HC |
| SRR6502088 | leaf | control | 6.89 | HC |
| SRR6502089 | leaf | control | 5.37 | HC |
| SRR6502090 | leaf | control | 6.40 | HC |
| SRR6168973 | leaf | none (control) | 18.87 | HC |
| SRR6168974 | leaf | none (control) | 20.68 | HC |
| SRR6168975 | leaf | none (control) | 23.83 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 12.96 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 9.82 | HC |
| SRR6168979 | leaf | none (control) | 4.52 | HC |
| SRR6168980 | leaf | none (control) | 3.74 | HC |
| SRR6168981 | leaf | none (control) | 5.31 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 3.16 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 3.31 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.60 | HC |
| SRR5110429 | panicle | Dawn | 6.85 | HC |
| SRR5110430 | panicle | Dawn | 6.15 | HC |
| SRR5110431 | panicle | Dawn | 6.95 | HC |
| SRR5110432 | panicle | Dawn | 6.56 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 6.33 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 6.17 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 6.07 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 6.32 | HC |
| SRR5110437 | panicle | Dawn + 7h | 7.54 | HC |
| SRR5110438 | panicle | Dawn + 7h | 8.55 | HC |
| SRR5110439 | panicle | Dawn + 7h | 5.86 | HC |
| SRR5110440 | panicle | Dawn + 7h | 6.21 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 7.92 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 7.09 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 6.98 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 5.64 | HC |
| SRR5110445 | panicle | Dusk | 5.84 | HC |
| SRR5110446 | panicle | Dusk | 11.42 | HC |
| SRR5110447 | panicle | Dusk | 9.68 | HC |
| SRR5110448 | panicle | Dusk | 12.21 | HC |
| SRR5110449 | panicle | Dawn + 14h | 13.20 | HC |
| SRR5110450 | panicle | Dawn + 14h | 6.60 | HC |
| SRR5110451 | panicle | Dawn + 14h | 8.71 | HC |
| SRR5110452 | panicle | Dawn + 14h | 11.93 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 6.86 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 5.59 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 5.94 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 8.43 | HC |
| SRR5110457 | panicle | Dawn + 21h | 5.91 | HC |
| SRR5110458 | panicle | Dawn + 21h | 6.08 | HC |
| SRR5110459 | panicle | Dawn + 21h | 5.01 | HC |
| SRR5110460 | panicle | Dawn + 21h | 7.62 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.44 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 4.32 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 3.65 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 5.26 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 6.27 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 18.92 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 18.92 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 4.44 | HC |
| SRR1213694 | root | wt | 3.42 | HC |
| SRR1213695 | root | wt | 5.73 | HC |
| SRR4947478 | root | control | 6.96 | HC |
| SRR4947479 | root | control | 7.06 | HC |
| SRR4947482 | root | Al | 5.72 | HC |
| SRR4947483 | root | Al | 7.91 | HC |
| SRR4947487 | root | control | 7.50 | HC |
| SRR4947490 | root | Al | 7.44 | HC |
| SRR4947491 | root | Al | 9.88 | HC |
| SRR4947494 | root | control | 6.16 | HC |
| SRR4947498 | root | Al | 10.84 | HC |
| SRR4947499 | root | Al | 9.27 | HC |
| SRR4947502 | root | control | 8.59 | HC |
| SRR4947503 | root | control | 8.34 | HC |
| SRR4947506 | root | Al | 6.93 | HC |
| SRR4947507 | root | Al | 8.50 | HC |
| SRR6502091 | root | 100 mM NaCl | 20.48 | HC |
| SRR6502092 | root | 100 mM NaCl | 25.75 | HC |
| SRR6502093 | root | 100 mM NaCl | 20.98 | HC |
| SRR6502094 | root | control | 23.07 | HC |
| SRR6502095 | root | control | 23.78 | HC |
| SRR6502096 | root | control | 15.24 | HC |
| SRR6502103 | root | 100 mM NaCl | 9.70 | HC |
| SRR6502104 | root | 100 mM NaCl | 10.56 | HC |
| SRR6502105 | root | 100 mM NaCl | 16.97 | HC |
| SRR6502106 | root | control | 10.97 | HC |
| SRR6502107 | root | control | 8.60 | HC |
| SRR6502108 | root | control | 10.02 | HC |
| SRR1740434 | root_differentiation_zone | wt | 4.97 | HC |
| SRR1740435 | root_differentiation_zone | wt | 9.28 | HC |
| SRR1740436 | root_differentiation_zone | wt | 9.93 | HC |
| SRR1740431 | root_elongation_zone | wt | 10.84 | HC |
| SRR1740432 | root_elongation_zone | wt | 8.94 | HC |
| SRR1740433 | root_elongation_zone | wt | 12.64 | HC |
| SRR1740428 | root_meristematic_zone | wt | 14.71 | HC |
| SRR1740429 | root_meristematic_zone | wt | 13.67 | HC |
| SRR1740430 | root_meristematic_zone | wt | 15.19 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 6.07 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 5.51 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.10 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.17 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.52 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 5.38 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 7.60 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 8.41 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 3.51 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 5.07 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 5.11 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 5.00 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 4.40 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 4.64 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 5.47 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 21.21 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 20.83 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 19.79 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 17.84 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 23.63 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 17.68 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 16.03 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 20.02 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 12.69 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 19.16 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 20.42 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 13.37 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 17.51 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 10.90 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 14.92 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 11.91 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 16.51 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 16.59 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 13.86 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 17.26 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 18.45 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 17.63 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 16.39 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 16.95 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 18.40 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 14.21 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 11.72 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 12.41 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 20.10 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 16.91 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 14.12 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 16.26 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 15.43 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 14.24 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 20.14 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 18.12 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 20.54 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 19.23 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 21.12 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 22.32 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 4.47 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 4.49 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 4.87 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 5.40 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 4.45 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 4.28 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 5.67 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 4.33 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 4.88 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 4.54 | HC |