| SRR5560727 | caryopsis | wild_type | 5.52 | HC |
| SRR5560729 | caryopsis | wild_type | 6.83 | HC |
| SRR4947495 | root | control | 7.72 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 6.27 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 7.00 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 5.23 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 9.77 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 7.84 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 5.31 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 7.61 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 7.84 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 5.75 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 8.61 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 6.45 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 4.65 | HC |
| SRR7265373 | embryo | dry seed 0 h | 5.57 | HC |
| SRR7265374 | embryo | dry seed 0 h | 5.69 | HC |
| SRR7265375 | embryo | dry seed 0 h | 2.49 | HC |
| SRR2338867 | endosprem | control | 2.66 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.78 | HC |
| SRR8060835 | leaf | wild_type | 4.43 | HC |
| SRR8060836 | leaf | wild_type | 5.90 | HC |
| SRR8060837 | leaf | wild_type | 4.10 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.74 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.27 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.50 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.74 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.13 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.94 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.92 | HC |
| SRR8611900 | leaf | Non-inoculated | 6.49 | HC |
| SRR8611901 | leaf | Non-inoculated | 5.88 | HC |
| SRR8611902 | leaf | Non-inoculated | 6.13 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 4.41 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 4.37 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 4.88 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.75 | HC |
| SRR1213693 | leaf | wt | 6.02 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 5.12 | HC |
| SRR6502090 | leaf | control | 4.47 | HC |
| SRR5856927 | leaf | control | 4.68 | HC |
| SRR5856928 | leaf | control | 4.29 | HC |
| SRR5856929 | leaf | control | 4.90 | HC |
| SRR5856930 | leaf | salt | 3.03 | HC |
| SRR5856931 | leaf | salt | 3.20 | HC |
| SRR5856932 | leaf | salt | 2.84 | HC |
| SRR5856933 | leaf | control | 5.10 | HC |
| SRR5856934 | leaf | control | 3.97 | HC |
| SRR5856935 | leaf | control | 3.67 | HC |
| SRR5856936 | leaf | salt | 2.27 | HC |
| SRR5856937 | leaf | salt | 2.66 | HC |
| SRR5856938 | leaf | salt | 2.33 | HC |
| SRR6168974 | leaf | none (control) | 5.07 | HC |
| SRR6168975 | leaf | none (control) | 5.53 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 7.91 | HC |
| SRR8582893 | panicle | PM | 5.21 | HC |
| SRR5110429 | panicle | Dawn | 5.19 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.51 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 4.84 | HC |
| SRR5110437 | panicle | Dawn + 7h | 6.24 | HC |
| SRR5110438 | panicle | Dawn + 7h | 5.68 | HC |
| SRR5110440 | panicle | Dawn + 7h | 6.06 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 5.13 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 5.37 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 6.86 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 6.86 | HC |
| SRR5110445 | panicle | Dusk | 4.73 | HC |
| SRR5110446 | panicle | Dusk | 7.60 | HC |
| SRR5110447 | panicle | Dusk | 7.55 | HC |
| SRR5110448 | panicle | Dusk | 8.26 | HC |
| SRR5110451 | panicle | Dawn + 14h | 5.23 | HC |
| SRR5110452 | panicle | Dawn + 14h | 7.80 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.46 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 6.66 | HC |
| SRR5110457 | panicle | Dawn + 21h | 4.81 | HC |
| SRR5110459 | panicle | Dawn + 21h | 5.14 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.75 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.67 | HC |
| SRR1633185 | panicle | WT | 5.99 | HC |
| SRR5126147 | root | "mock,1_day" | 5.20 | HC |
| SRR5126148 | root | "mock,1_day" | 5.91 | HC |
| SRR5126149 | root | "mock,1_day" | 5.35 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 7.00 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 6.83 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 5.67 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 5.40 | HC |
| SRR5126165 | root | "mock,14_days" | 5.28 | HC |
| SRR5126169 | root | "mock,14_days" | 4.96 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.80 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 5.68 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 6.16 | HC |
| SRR1213695 | root | wt | 4.15 | HC |
| SRR4947478 | root | control | 6.33 | HC |
| SRR4947479 | root | control | 6.97 | HC |
| SRR4947482 | root | Al | 4.43 | HC |
| SRR4947483 | root | Al | 4.91 | HC |
| SRR4947487 | root | control | 6.21 | HC |
| SRR4947490 | root | Al | 5.53 | HC |
| SRR4947491 | root | Al | 6.95 | HC |
| SRR4947494 | root | control | 6.37 | HC |
| SRR4947498 | root | Al | 9.27 | HC |
| SRR4947499 | root | Al | 7.24 | HC |
| SRR4947502 | root | control | 7.84 | HC |
| SRR4947503 | root | control | 6.16 | HC |
| SRR4947506 | root | Al | 6.59 | HC |
| SRR4947507 | root | Al | 8.15 | HC |
| SRR4947509 | root | Al | 5.54 | HC |
| SRR6502091 | root | 100 mM NaCl | 7.43 | HC |
| SRR6502092 | root | 100 mM NaCl | 6.17 | HC |
| SRR6502093 | root | 100 mM NaCl | 6.19 | HC |
| SRR6502104 | root | 100 mM NaCl | 5.71 | HC |
| SRR6502105 | root | 100 mM NaCl | 7.80 | HC |
| SRR6502106 | root | control | 4.52 | HC |
| SRR6502108 | root | control | 4.87 | HC |
| SRR1740436 | root_differentiation_zone | wt | 4.39 | HC |
| SRR1740432 | root_elongation_zone | wt | 5.10 | HC |
| SRR1740433 | root_elongation_zone | wt | 4.02 | HC |
| SRR1740429 | root_meristematic_zone | wt | 6.65 | HC |
| SRR1740430 | root_meristematic_zone | wt | 9.35 | HC |
| SRR2154086 | seedling | wt | 4.55 | HC |
| SRR2154082 | seedling | wt | 4.56 | HC |
| SRR2154083 | seedling | wt | 5.58 | HC |
| SRR2154084 | seedling | wt | 4.24 | HC |
| SRR2154085 | seedling | wt | 4.85 | HC |
| SRR2154087 | seedling | wt | 5.40 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.75 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.56 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.71 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 3.41 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 3.87 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 4.59 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.98 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 11.69 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 8.94 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 8.57 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 8.63 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 9.32 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 8.30 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 8.45 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 7.33 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.91 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.47 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 5.28 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 4.54 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 8.62 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 7.62 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 9.82 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 7.43 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 5.67 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 5.27 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 4.62 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 5.90 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 5.25 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 4.70 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 6.17 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 4.14 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 3.20 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 4.53 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 3.86 | HC |