| SRR4457249 | 2nd_leaf | DAH4 | 8.28 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 6.03 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 7.69 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 6.35 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 6.20 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 6.65 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 6.47 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 5.95 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 5.36 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.90 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 4.15 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 6.55 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 5.58 | HC |
| SRR358798 | callus | wt | 9.44 | HC |
| SRR6320473 | carpel | wt | 11.10 | HC |
| SRR6320498 | carpel | wt | 12.96 | HC |
| SRR5560727 | caryopsis | wild_type | 16.06 | HC |
| SRR5560728 | caryopsis | wild_type | 15.52 | HC |
| SRR5560729 | caryopsis | wild_type | 12.55 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 6.76 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 6.92 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 4.12 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 6.34 | HC |
| SRR7265400 | coleoptile | 2dA | 4.86 | HC |
| SRR7265401 | coleoptile | 2dA | 4.57 | HC |
| SRR7265402 | coleoptile | 2dA | 5.23 | HC |
| SRR7265403 | coleoptile | 2dN | 8.55 | HC |
| SRR7265404 | coleoptile | 2dN | 7.69 | HC |
| SRR7265405 | coleoptile | 2dN | 7.13 | HC |
| SRR7265406 | coleoptile | 3dA | 6.87 | HC |
| SRR7265407 | coleoptile | 3dA | 6.86 | HC |
| SRR7265408 | coleoptile | 3dA | 4.80 | HC |
| SRR7265409 | coleoptile | 3dN | 7.39 | HC |
| SRR7265410 | coleoptile | 3dN | 6.83 | HC |
| SRR7265411 | coleoptile | 3dN | 6.20 | HC |
| SRR7265415 | coleoptile | 4dN | 6.62 | HC |
| SRR7265416 | coleoptile | 4dN | 6.52 | HC |
| SRR7265417 | coleoptile | 4dN | 5.38 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 5.05 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 5.70 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 5.21 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 7.15 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 4.89 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 5.75 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 8.19 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 5.18 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 6.18 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 5.46 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 6.15 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 6.80 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 6.42 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 6.03 | HC |
| SRR7265373 | embryo | dry seed 0 h | 5.63 | HC |
| SRR7265374 | embryo | dry seed 0 h | 5.89 | HC |
| SRR7265375 | embryo | dry seed 0 h | 2.58 | HC |
| SRR7265376 | embryo | 1hA | 7.91 | HC |
| SRR7265377 | embryo | 1hA | 9.32 | HC |
| SRR7265378 | embryo | 1hA | 7.17 | HC |
| SRR7265379 | embryo | 1hN | 7.22 | HC |
| SRR7265380 | embryo | 1hN | 8.95 | HC |
| SRR7265381 | embryo | 1hN | 9.42 | HC |
| SRR7265382 | embryo | 3hA | 5.32 | HC |
| SRR7265384 | embryo | 3hA | 5.12 | HC |
| SRR7265385 | embryo | 3hN | 8.10 | HC |
| SRR7265386 | embryo | 3hN | 7.42 | HC |
| SRR7265387 | embryo | 3hN | 8.43 | HC |
| SRR7265388 | embryo | 12hA | 7.85 | HC |
| SRR7265389 | embryo | 12hA | 10.60 | HC |
| SRR7265390 | embryo | 12hA | 7.82 | HC |
| SRR7265391 | embryo | 12hN | 12.01 | HC |
| SRR7265392 | embryo | 12hN | 11.90 | HC |
| SRR7265393 | embryo | 12hN | 10.21 | HC |
| SRR7265394 | embryo | 24hA | 5.89 | HC |
| SRR7265395 | embryo | 24hA | 5.74 | HC |
| SRR7265396 | embryo | 24hA | 6.86 | HC |
| SRR7265397 | embryo | 24hN | 9.23 | HC |
| SRR7265398 | embryo | 24hN | 12.29 | HC |
| SRR7265399 | embryo | 24hN | 10.24 | HC |
| SRR4457231 | flag_leaf | DAH4 | 4.94 | HC |
| SRR4457232 | flag_leaf | DAH4 | 5.64 | HC |
| SRR4457233 | flag_leaf | DAH4 | 5.29 | HC |
| SRR4457234 | flag_leaf | DAH12 | 5.79 | HC |
| SRR4457235 | flag_leaf | DAH12 | 6.53 | HC |
| SRR4457236 | flag_leaf | DAH12 | 6.83 | HC |
| SRR4457237 | flag_leaf | DAH20 | 5.31 | HC |
| SRR4457238 | flag_leaf | DAH20 | 5.07 | HC |
| SRR4457239 | flag_leaf | DAH20 | 5.46 | HC |
| SRR4457243 | flag_leaf | DAH36 | 5.62 | HC |
| SRR4457244 | flag_leaf | DAH36 | 4.72 | HC |
| SRR4457245 | flag_leaf | DAH36 | 6.19 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.75 | HC |
| SRR1213691 | flower | wt | 4.64 | HC |
| SRR8060835 | leaf | wild_type | 3.08 | HC |
| SRR8060836 | leaf | wild_type | 6.90 | HC |
| SRR8060837 | leaf | wild_type | 3.19 | HC |
| SRR8240825 | leaf | wild_type | 4.25 | HC |
| SRR8240818 | leaf | wild_type | 3.55 | HC |
| SRR8240819 | leaf | wild_type | 4.99 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.15 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 6.29 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 5.15 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 5.55 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.63 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.37 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.89 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.29 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.78 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.11 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.15 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 5.09 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.10 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.38 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.73 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.56 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.28 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.78 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.56 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 8.48 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 8.48 | HC |
| SRR1761528 | leaf | drought | 8.48 | HC |
| SRR504365 | leaf | wt | 6.37 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 7.10 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.46 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.69 | HC |
| SRR6417967 | leaf | H2O_control | 4.01 | HC |
| SRR6417968 | leaf | H2O_control | 3.89 | HC |
| SRR6417969 | leaf | H2O_control | 4.83 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 3.99 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 5.21 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 5.76 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 6.42 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 6.92 | HC |
| SRR8611901 | leaf | Non-inoculated | 3.82 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 4.12 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 4.21 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 4.37 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 4.91 | HC |
| SRR1213692 | leaf | wt | 5.55 | HC |
| SRR1213693 | leaf | wt | 5.94 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 6.16 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 7.04 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 5.80 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 7.45 | HC |
| SRR5856927 | leaf | control | 6.77 | HC |
| SRR5856928 | leaf | control | 6.46 | HC |
| SRR5856929 | leaf | control | 6.15 | HC |
| SRR5856930 | leaf | salt | 8.27 | HC |
| SRR5856931 | leaf | salt | 8.24 | HC |
| SRR5856932 | leaf | salt | 7.59 | HC |
| SRR5856933 | leaf | control | 7.32 | HC |
| SRR5856934 | leaf | control | 5.06 | HC |
| SRR5856935 | leaf | control | 7.26 | HC |
| SRR5856936 | leaf | salt | 7.53 | HC |
| SRR5856937 | leaf | salt | 7.08 | HC |
| SRR5856938 | leaf | salt | 4.97 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 17.34 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 8.30 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 8.45 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 7.66 | HC |
| SRR6168973 | leaf | none (control) | 4.61 | HC |
| SRR6168974 | leaf | none (control) | 5.27 | HC |
| SRR6168975 | leaf | none (control) | 6.60 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 10.11 | HC |
| SRR6168979 | leaf | none (control) | 7.30 | HC |
| SRR6168980 | leaf | none (control) | 3.11 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 3.32 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.25 | HC |
| SRR8582893 | panicle | PM | 5.73 | HC |
| SRR5110429 | panicle | Dawn | 6.57 | HC |
| SRR5110430 | panicle | Dawn | 8.37 | HC |
| SRR5110431 | panicle | Dawn | 7.19 | HC |
| SRR5110432 | panicle | Dawn | 5.75 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 6.09 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 4.24 | HC |
| SRR5110437 | panicle | Dawn + 7h | 4.31 | HC |
| SRR5110439 | panicle | Dawn + 7h | 7.26 | HC |
| SRR5110440 | panicle | Dawn + 7h | 6.61 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.48 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 5.22 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 6.93 | HC |
| SRR5110445 | panicle | Dusk | 6.32 | HC |
| SRR5110446 | panicle | Dusk | 6.94 | HC |
| SRR5110447 | panicle | Dusk | 8.08 | HC |
| SRR5110448 | panicle | Dusk | 7.93 | HC |
| SRR5110449 | panicle | Dawn + 14h | 8.05 | HC |
| SRR5110451 | panicle | Dawn + 14h | 6.71 | HC |
| SRR5110452 | panicle | Dawn + 14h | 8.13 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 7.03 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 4.95 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.72 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 7.73 | HC |
| SRR5110458 | panicle | Dawn + 21h | 5.32 | HC |
| SRR5110459 | panicle | Dawn + 21h | 5.35 | HC |
| SRR5110460 | panicle | Dawn + 21h | 7.38 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 9.85 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 3.88 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 3.80 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 5.95 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.36 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 11.94 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 10.64 | HC |
| SRR5126147 | root | "mock,1_day" | 7.48 | HC |
| SRR5126148 | root | "mock,1_day" | 6.84 | HC |
| SRR5126149 | root | "mock,1_day" | 7.91 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 7.43 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 6.51 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 6.46 | HC |
| SRR5126153 | root | "mock,7_days" | 6.30 | HC |
| SRR5126155 | root | "mock,7_days" | 7.52 | HC |
| SRR5126157 | root | "mock,7_days" | 10.62 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 6.76 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 6.62 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 9.32 | HC |
| SRR5126165 | root | "mock,14_days" | 7.08 | HC |
| SRR5126167 | root | "mock,14_days" | 5.53 | HC |
| SRR5126169 | root | "mock,14_days" | 8.80 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.90 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 7.18 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 7.33 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.52 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 3.50 | HC |
| SRR1213694 | root | wt | 4.46 | HC |
| SRR1213695 | root | wt | 6.16 | HC |
| SRR4947482 | root | Al | 3.76 | HC |
| SRR4947484 | root | Al | 5.25 | HC |
| SRR4947487 | root | control | 5.46 | HC |
| SRR4947489 | root | control | 5.60 | HC |
| SRR4947497 | root | control | 6.44 | HC |
| SRR4947498 | root | Al | 7.33 | HC |
| SRR4947499 | root | Al | 7.22 | HC |
| SRR4947502 | root | control | 6.53 | HC |
| SRR4947503 | root | control | 5.50 | HC |
| SRR4947504 | root | control | 5.39 | HC |
| SRR4947507 | root | Al | 10.71 | HC |
| SRR4947509 | root | Al | 5.71 | HC |
| SRR6502091 | root | 100 mM NaCl | 6.65 | HC |
| SRR6502092 | root | 100 mM NaCl | 8.98 | HC |
| SRR6502093 | root | 100 mM NaCl | 8.61 | HC |
| SRR6502094 | root | control | 6.14 | HC |
| SRR6502103 | root | 100 mM NaCl | 8.00 | HC |
| SRR6502104 | root | 100 mM NaCl | 9.54 | HC |
| SRR6502105 | root | 100 mM NaCl | 11.41 | HC |
| SRR6502106 | root | control | 5.91 | HC |
| SRR6502107 | root | control | 6.37 | HC |
| SRR6502108 | root | control | 5.23 | HC |
| SRR1740435 | root_differentiation_zone | wt | 3.81 | HC |
| SRR1740436 | root_differentiation_zone | wt | 6.39 | HC |
| SRR1740431 | root_elongation_zone | wt | 4.68 | HC |
| SRR1740432 | root_elongation_zone | wt | 6.83 | HC |
| SRR1740433 | root_elongation_zone | wt | 7.83 | HC |
| SRR1740428 | root_meristematic_zone | wt | 7.65 | HC |
| SRR1740430 | root_meristematic_zone | wt | 3.78 | HC |
| SRR6441554 | seedling | wild_type | 3.64 | HC |
| SRR2154086 | seedling | wt | 4.84 | HC |
| SRR2154082 | seedling | wt | 3.91 | HC |
| SRR2154083 | seedling | wt | 3.86 | HC |
| SRR2154084 | seedling | wt | 4.37 | HC |
| SRR2154085 | seedling | wt | 4.58 | HC |
| SRR2154087 | seedling | wt | 4.41 | HC |
| SRR3098741 | seedling | wt | 3.76 | HC |
| SRR3098742 | seedling | wt | 3.94 | HC |
| SRR3098743 | seedling | wt | 3.82 | HC |
| SRR2857719 | seedling | drought_stress_0h | 4.93 | HC |
| SRR2857720 | seedling | drought_stress_1h | 4.05 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.38 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.18 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.69 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.99 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.01 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.02 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.48 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.16 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.28 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.90 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.53 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.18 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.32 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 9.86 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 9.20 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 8.70 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 9.93 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 9.77 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 8.43 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 9.96 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 14.06 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 12.97 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 11.87 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 10.33 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 10.65 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 8.80 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 11.37 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 10.15 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 11.34 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 9.95 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 12.03 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 11.85 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 10.59 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 12.40 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 7.64 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 9.18 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 5.88 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.91 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.65 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.57 | HC |