| SRR3745125 | anther | wt | 7.11 | HC |
| SRR3745126 | anther | wt | 6.87 | HC |
| SRR3745127 | anther | wt | 7.16 | HC |
| SRR358795 | callus | wt | 16.31 | HC |
| SRR358796 | callus | wt | 14.24 | HC |
| SRR358797 | callus | wt | 12.63 | HC |
| SRR358798 | callus | wt | 17.00 | HC |
| SRR5560727 | caryopsis | wild_type | 6.22 | HC |
| SRR5560728 | caryopsis | wild_type | 11.35 | HC |
| SRR5560729 | caryopsis | wild_type | 17.19 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 19.56 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 18.85 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 18.66 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 23.02 | HC |
| SRR7265400 | coleoptile | 2dA | 12.24 | HC |
| SRR7265401 | coleoptile | 2dA | 11.55 | HC |
| SRR7265402 | coleoptile | 2dA | 14.30 | HC |
| SRR7265403 | coleoptile | 2dN | 14.00 | HC |
| SRR7265404 | coleoptile | 2dN | 11.27 | HC |
| SRR7265405 | coleoptile | 2dN | 13.62 | HC |
| SRR7265406 | coleoptile | 3dA | 14.65 | HC |
| SRR7265407 | coleoptile | 3dA | 16.03 | HC |
| SRR7265408 | coleoptile | 3dA | 11.54 | HC |
| SRR7265409 | coleoptile | 3dN | 20.92 | HC |
| SRR7265410 | coleoptile | 3dN | 21.78 | HC |
| SRR7265411 | coleoptile | 3dN | 19.81 | HC |
| SRR7265412 | coleoptile | 4dA | 3.66 | HC |
| SRR7265413 | coleoptile | 4dA | 7.16 | HC |
| SRR7265414 | coleoptile | 4dA | 6.40 | HC |
| SRR7265415 | coleoptile | 4dN | 12.99 | HC |
| SRR7265416 | coleoptile | 4dN | 16.33 | HC |
| SRR7265417 | coleoptile | 4dN | 16.76 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 12.73 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 16.15 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 17.58 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 18.58 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 15.96 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 4.99 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 18.19 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 5.81 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 3.85 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 19.14 | HC |
| SRR7265376 | embryo | 1hA | 3.87 | HC |
| SRR7265378 | embryo | 1hA | 4.05 | HC |
| SRR7265381 | embryo | 1hN | 3.44 | HC |
| SRR7265382 | embryo | 3hA | 8.56 | HC |
| SRR7265383 | embryo | 3hA | 5.23 | HC |
| SRR7265384 | embryo | 3hA | 5.41 | HC |
| SRR7265386 | embryo | 3hN | 3.49 | HC |
| SRR7265387 | embryo | 3hN | 4.12 | HC |
| SRR7265388 | embryo | 12hA | 14.97 | HC |
| SRR7265389 | embryo | 12hA | 11.93 | HC |
| SRR7265390 | embryo | 12hA | 14.84 | HC |
| SRR7265391 | embryo | 12hN | 10.51 | HC |
| SRR7265392 | embryo | 12hN | 9.36 | HC |
| SRR7265393 | embryo | 12hN | 10.88 | HC |
| SRR7265394 | embryo | 24hA | 13.34 | HC |
| SRR7265395 | embryo | 24hA | 10.73 | HC |
| SRR7265396 | embryo | 24hA | 14.42 | HC |
| SRR7265397 | embryo | 24hN | 10.43 | HC |
| SRR7265398 | embryo | 24hN | 11.28 | HC |
| SRR7265399 | embryo | 24hN | 13.81 | HC |
| SRR2338867 | endosprem | control | 2.41 | HC |
| SRR2338869 | endosprem | high_temperature | 4.63 | HC |
| SRR1213690 | flower | wt(flower buds) | 6.40 | HC |
| SRR1213691 | flower | wt | 16.11 | HC |
| SRR8240824 | leaf | wild_type | 5.80 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 23.72 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 15.26 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 15.52 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 15.19 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.91 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.41 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 7.41 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.37 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 11.24 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 12.25 | HC |
| SRR5856933 | leaf | control | 3.31 | HC |
| SRR5856934 | leaf | control | 2.99 | HC |
| SRR5856935 | leaf | control | 4.10 | HC |
| SRR5856936 | leaf | salt | 2.41 | HC |
| SRR5856937 | leaf | salt | 2.51 | HC |
| SRR5856938 | leaf | salt | 2.89 | HC |
| SRR6168973 | leaf | none (control) | 25.78 | HC |
| SRR6168974 | leaf | none (control) | 27.81 | HC |
| SRR6168975 | leaf | none (control) | 10.19 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 27.34 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 5.63 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 21.43 | HC |
| SRR6168979 | leaf | none (control) | 2.43 | HC |
| SRR6168980 | leaf | none (control) | 3.88 | HC |
| SRR6168981 | leaf | none (control) | 3.08 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 4.77 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 6.03 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 4.72 | HC |
| SRR4947496 | root | control | 16.96 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.27 | HC |
| SRR1633182 | panicle | WT | 55.84 | HC |
| SRR1633185 | panicle | WT | 48.01 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.50 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 4.07 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.86 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 6.25 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 17.83 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 15.36 | HC |
| SRR5126147 | root | "mock,1_day" | 22.37 | HC |
| SRR5126148 | root | "mock,1_day" | 20.11 | HC |
| SRR5126149 | root | "mock,1_day" | 13.15 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 13.51 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 10.19 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 13.01 | HC |
| SRR5126153 | root | "mock,7_days" | 11.44 | HC |
| SRR5126155 | root | "mock,7_days" | 12.36 | HC |
| SRR5126157 | root | "mock,7_days" | 8.38 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 10.45 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 8.73 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 11.63 | HC |
| SRR5126165 | root | "mock,14_days" | 6.95 | HC |
| SRR5126167 | root | "mock,14_days" | 7.57 | HC |
| SRR5126169 | root | "mock,14_days" | 15.76 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 9.63 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 9.74 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 11.24 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 4.84 | HC |
| SRR4947480 | root | control | 18.54 | HC |
| SRR4947481 | root | control | 18.63 | HC |
| SRR4947484 | root | Al | 11.79 | HC |
| SRR4947485 | root | Al | 18.24 | HC |
| SRR4947488 | root | control | 13.98 | HC |
| SRR4947489 | root | control | 14.75 | HC |
| SRR4947492 | root | Al | 13.64 | HC |
| SRR4947493 | root | Al | 13.62 | HC |
| SRR4947497 | root | control | 14.47 | HC |
| SRR4947500 | root | Al | 7.93 | HC |
| SRR4947501 | root | Al | 11.40 | HC |
| SRR4947504 | root | control | 16.48 | HC |
| SRR4947505 | root | control | 15.59 | HC |
| SRR4947508 | root | Al | 7.56 | HC |
| SRR4947509 | root | Al | 9.23 | HC |
| SRR6502091 | root | 100 mM NaCl | 13.87 | HC |
| SRR6502092 | root | 100 mM NaCl | 15.22 | HC |
| SRR6502093 | root | 100 mM NaCl | 11.37 | HC |
| SRR6502094 | root | control | 12.44 | HC |
| SRR6502095 | root | control | 14.66 | HC |
| SRR6502096 | root | control | 13.03 | HC |
| SRR6502103 | root | 100 mM NaCl | 10.52 | HC |
| SRR6502104 | root | 100 mM NaCl | 9.42 | HC |
| SRR6502105 | root | 100 mM NaCl | 12.42 | HC |
| SRR6502106 | root | control | 9.89 | HC |
| SRR6502107 | root | control | 11.14 | HC |
| SRR6502108 | root | control | 10.55 | HC |
| SRR1740434 | root_differentiation_zone | wt | 20.38 | HC |
| SRR1740435 | root_differentiation_zone | wt | 20.58 | HC |
| SRR1740436 | root_differentiation_zone | wt | 15.93 | HC |
| SRR1740431 | root_elongation_zone | wt | 24.88 | HC |
| SRR1740432 | root_elongation_zone | wt | 25.47 | HC |
| SRR1740433 | root_elongation_zone | wt | 27.28 | HC |
| SRR1740428 | root_meristematic_zone | wt | 23.47 | HC |
| SRR1740429 | root_meristematic_zone | wt | 18.61 | HC |
| SRR1740430 | root_meristematic_zone | wt | 19.09 | HC |
| SRR6441554 | seedling | wild_type | 5.96 | HC |
| SRR6441555 | seedling | wild_type | 6.20 | HC |
| SRR2154086 | seedling | wt | 10.46 | HC |
| SRR2154084 | seedling | wt | 7.19 | HC |
| SRR2154085 | seedling | wt | 11.25 | HC |
| SRR2154087 | seedling | wt | 13.10 | HC |
| SRR3098742 | seedling | wt | 4.69 | HC |
| SRR3098743 | seedling | wt | 3.32 | HC |
| SRR2857719 | seedling | drought_stress_0h | 8.69 | HC |
| SRR2857720 | seedling | drought_stress_1h | 6.38 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 7.41 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 7.58 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 10.54 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 20.26 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.85 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 9.86 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.84 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 9.39 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.78 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.31 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.15 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.66 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.81 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.84 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.38 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.84 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.18 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.18 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 4.67 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 6.10 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.01 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.79 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 46.25 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 46.86 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 48.89 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 33.98 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 41.99 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 38.36 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 46.00 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 45.03 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 47.18 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 45.45 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 52.12 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 50.78 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 45.95 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 46.25 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 54.62 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 40.74 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 42.16 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 50.48 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 49.21 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 47.83 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 46.15 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 42.20 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 48.98 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 11.00 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 9.62 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 7.66 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 13.28 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 13.54 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 8.77 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 34.42 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 31.72 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 35.33 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 30.66 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 31.62 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 29.47 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 18.05 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 17.82 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 22.93 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 3.44 | HC |