| SRR358795 | callus | wt | 58.60 | HC |
| SRR358796 | callus | wt | 55.08 | HC |
| SRR358797 | callus | wt | 73.48 | HC |
| SRR358798 | callus | wt | 77.35 | HC |
| SRR5560727 | caryopsis | wild_type | 243.03 | HC |
| SRR5560728 | caryopsis | wild_type | 175.34 | HC |
| SRR5560729 | caryopsis | wild_type | 117.45 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 5.42 | HC |
| SRR7265373 | embryo | dry seed 0 h | 184.13 | HC |
| SRR7265374 | embryo | dry seed 0 h | 214.30 | HC |
| SRR7265375 | embryo | dry seed 0 h | 55.76 | HC |
| SRR7265376 | embryo | 1hA | 178.07 | HC |
| SRR7265377 | embryo | 1hA | 153.45 | HC |
| SRR7265378 | embryo | 1hA | 181.89 | HC |
| SRR7265379 | embryo | 1hN | 199.65 | HC |
| SRR7265380 | embryo | 1hN | 190.61 | HC |
| SRR7265381 | embryo | 1hN | 212.29 | HC |
| SRR7265382 | embryo | 3hA | 115.45 | HC |
| SRR7265383 | embryo | 3hA | 133.89 | HC |
| SRR7265384 | embryo | 3hA | 88.15 | HC |
| SRR7265385 | embryo | 3hN | 151.33 | HC |
| SRR7265386 | embryo | 3hN | 158.68 | HC |
| SRR7265387 | embryo | 3hN | 146.13 | HC |
| SRR7265388 | embryo | 12hA | 5.33 | HC |
| SRR7265389 | embryo | 12hA | 5.12 | HC |
| SRR7265390 | embryo | 12hA | 5.46 | HC |
| SRR7265391 | embryo | 12hN | 13.45 | HC |
| SRR7265392 | embryo | 12hN | 8.47 | HC |
| SRR7265393 | embryo | 12hN | 14.52 | HC |
| SRR2338866 | endosprem | control | 28.73 | HC |
| SRR2338867 | endosprem | control | 25.08 | HC |
| SRR2338868 | endosprem | high_temperature | 40.66 | HC |
| SRR2338869 | endosprem | high_temperature | 46.99 | HC |
| SRR1213690 | flower | wt(flower buds) | 10.46 | HC |
| SRR1213691 | flower | wt | 8.82 | HC |
| SRR8240824 | leaf | wild_type | 5.63 | HC |
| SRR8240825 | leaf | wild_type | 6.58 | HC |
| SRR8240819 | leaf | wild_type | 4.76 | HC |
| SRR8240820 | leaf | wild_type | 3.25 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.30 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.65 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.15 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.25 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.86 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 7.16 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.54 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.85 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 50.29 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 60.24 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 6.74 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 18.61 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 50.24 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 67.20 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 6.81 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 15.48 | HC |
| SRR1761528 | leaf | drought | 50.21 | HC |
| SRR1761529 | leaf | drought | 61.19 | HC |
| SRR1761530 | leaf | control | 6.79 | HC |
| SRR1761531 | leaf | control | 15.65 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 129.90 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 110.66 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 80.21 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 57.02 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 85.64 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 143.32 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 10.93 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 7.73 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 11.57 | HC |
| SRR6502089 | leaf | control | 4.50 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 12.32 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 12.24 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 13.08 | HC |
| SRR6502100 | leaf | control | 5.39 | HC |
| SRR6502101 | leaf | control | 4.90 | HC |
| SRR6502102 | leaf | control | 6.46 | HC |
| SRR5856936 | leaf | salt | 2.97 | HC |
| SRR5856937 | leaf | salt | 2.46 | HC |
| SRR6168979 | leaf | none (control) | 4.82 | HC |
| SRR6168980 | leaf | none (control) | 12.38 | HC |
| SRR6168981 | leaf | none (control) | 3.17 | HC |
| SRR8582888 | panicle | AM | 15.08 | HC |
| SRR8582889 | panicle | AM | 15.28 | HC |
| SRR8582890 | panicle | AM | 16.66 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 30.73 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 87.83 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 7.66 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 8.39 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.87 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 7.50 | HC |
| SRR5126147 | root | "mock,1_day" | 8.47 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.56 | HC |
| SRR5126167 | root | "mock,14_days" | 13.35 | HC |
| SRR2857721 | seedling | drought_stress_6h | 25.19 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 14.26 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.22 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 7.67 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 7.73 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 8.92 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.91 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 8.72 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 7.06 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 8.73 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.63 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.16 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 5.40 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 7.10 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.70 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.66 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.31 | HC |