| SRR6320473 | carpel | wt | 15.90 | HC |
| SRR6320498 | carpel | wt | 18.32 | HC |
| SRR5560727 | caryopsis | wild_type | 16.43 | HC |
| SRR5560728 | caryopsis | wild_type | 15.56 | HC |
| SRR5560729 | caryopsis | wild_type | 8.69 | HC |
| SRR4947495 | root | control | 69.23 | HC |
| SRR7265400 | coleoptile | 2dA | 4.62 | HC |
| SRR7265401 | coleoptile | 2dA | 4.29 | HC |
| SRR7265402 | coleoptile | 2dA | 4.34 | HC |
| SRR7265412 | coleoptile | 4dA | 3.90 | HC |
| SRR7265414 | coleoptile | 4dA | 5.09 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 10.96 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 10.47 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 14.87 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 6.90 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 15.68 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 7.33 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 6.36 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 10.69 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 14.33 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 9.81 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 14.77 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 7.99 | HC |
| SRR7265388 | embryo | 12hA | 6.35 | HC |
| SRR7265389 | embryo | 12hA | 6.79 | HC |
| SRR7265390 | embryo | 12hA | 5.35 | HC |
| SRR7265394 | embryo | 24hA | 6.19 | HC |
| SRR7265395 | embryo | 24hA | 7.78 | HC |
| SRR7265396 | embryo | 24hA | 6.60 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.05 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.69 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 5.83 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.64 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.25 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.10 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.86 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.63 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.56 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.09 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.75 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 45.20 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 23.87 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 45.20 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 23.87 | HC |
| SRR1761528 | leaf | drought | 45.20 | HC |
| SRR1761529 | leaf | drought | 23.88 | HC |
| SRR504365 | leaf | wt | 6.54 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 82.41 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 58.15 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 43.12 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 28.66 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 47.22 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 47.41 | HC |
| SRR8611900 | leaf | Non-inoculated | 4.79 | HC |
| SRR8611901 | leaf | Non-inoculated | 5.32 | HC |
| SRR8611902 | leaf | Non-inoculated | 5.01 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 5.84 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 6.10 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 5.46 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 22.55 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 23.63 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 5.33 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 5.48 | HC |
| SRR5856927 | leaf | control | 27.05 | HC |
| SRR5856928 | leaf | control | 25.02 | HC |
| SRR5856929 | leaf | control | 25.27 | HC |
| SRR5856930 | leaf | salt | 26.29 | HC |
| SRR5856931 | leaf | salt | 29.11 | HC |
| SRR5856932 | leaf | salt | 24.21 | HC |
| SRR5856933 | leaf | control | 36.87 | HC |
| SRR5856934 | leaf | control | 23.75 | HC |
| SRR5856935 | leaf | control | 32.29 | HC |
| SRR5856936 | leaf | salt | 32.83 | HC |
| SRR5856937 | leaf | salt | 34.36 | HC |
| SRR5856938 | leaf | salt | 29.93 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 8.36 | HC |
| SRR6168975 | leaf | none (control) | 10.00 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 7.65 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 46.60 | HC |
| SRR6168979 | leaf | none (control) | 8.27 | HC |
| SRR6168980 | leaf | none (control) | 23.16 | HC |
| SRR6168981 | leaf | none (control) | 26.86 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 35.51 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 9.94 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 31.25 | HC |
| SRR8582891 | panicle | PM | 6.23 | HC |
| SRR8582893 | panicle | PM | 6.82 | HC |
| SRR4947496 | root | control | 48.53 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.17 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 5.74 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 164.58 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 171.48 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 121.80 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 126.94 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 8.25 | HC |
| SRR5126147 | root | "mock,1_day" | 15.41 | HC |
| SRR5126148 | root | "mock,1_day" | 9.65 | HC |
| SRR5126149 | root | "mock,1_day" | 21.05 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 22.37 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 46.80 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 23.86 | HC |
| SRR5126153 | root | "mock,7_days" | 22.23 | HC |
| SRR5126155 | root | "mock,7_days" | 17.03 | HC |
| SRR5126157 | root | "mock,7_days" | 50.74 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 27.56 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 60.97 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 28.64 | HC |
| SRR5126165 | root | "mock,14_days" | 64.39 | HC |
| SRR5126167 | root | "mock,14_days" | 26.48 | HC |
| SRR5126169 | root | "mock,14_days" | 34.47 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 22.94 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 29.81 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 36.97 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 31.38 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 31.48 | HC |
| SRR1213695 | root | wt | 4.21 | HC |
| SRR4947478 | root | control | 57.69 | HC |
| SRR4947479 | root | control | 51.66 | HC |
| SRR4947480 | root | control | 54.85 | HC |
| SRR4947481 | root | control | 49.67 | HC |
| SRR4947482 | root | Al | 50.29 | HC |
| SRR4947483 | root | Al | 45.31 | HC |
| SRR4947484 | root | Al | 53.83 | HC |
| SRR4947485 | root | Al | 50.57 | HC |
| SRR4947487 | root | control | 39.51 | HC |
| SRR4947488 | root | control | 41.38 | HC |
| SRR4947489 | root | control | 54.88 | HC |
| SRR4947490 | root | Al | 73.82 | HC |
| SRR4947491 | root | Al | 74.47 | HC |
| SRR4947492 | root | Al | 66.57 | HC |
| SRR4947493 | root | Al | 55.84 | HC |
| SRR4947494 | root | control | 67.43 | HC |
| SRR4947497 | root | control | 56.22 | HC |
| SRR4947498 | root | Al | 119.74 | HC |
| SRR4947499 | root | Al | 77.01 | HC |
| SRR4947500 | root | Al | 59.27 | HC |
| SRR4947501 | root | Al | 79.40 | HC |
| SRR4947502 | root | control | 88.40 | HC |
| SRR4947503 | root | control | 55.88 | HC |
| SRR4947504 | root | control | 65.15 | HC |
| SRR4947505 | root | control | 53.95 | HC |
| SRR4947506 | root | Al | 69.99 | HC |
| SRR4947507 | root | Al | 107.04 | HC |
| SRR4947508 | root | Al | 46.50 | HC |
| SRR4947509 | root | Al | 52.72 | HC |
| SRR6502091 | root | 100 mM NaCl | 15.35 | HC |
| SRR6502092 | root | 100 mM NaCl | 16.69 | HC |
| SRR6502093 | root | 100 mM NaCl | 21.02 | HC |
| SRR6502094 | root | control | 35.13 | HC |
| SRR6502095 | root | control | 35.69 | HC |
| SRR6502096 | root | control | 38.28 | HC |
| SRR6502103 | root | 100 mM NaCl | 20.32 | HC |
| SRR6502104 | root | 100 mM NaCl | 18.97 | HC |
| SRR6502105 | root | 100 mM NaCl | 18.03 | HC |
| SRR6502106 | root | control | 37.09 | HC |
| SRR6502107 | root | control | 41.79 | HC |
| SRR6502108 | root | control | 40.90 | HC |
| SRR6441554 | seedling | wild_type | 10.28 | HC |
| SRR6441555 | seedling | wild_type | 5.51 | HC |
| SRR2154086 | seedling | wt | 20.08 | HC |
| SRR2154082 | seedling | wt | 10.24 | HC |
| SRR2154083 | seedling | wt | 7.91 | HC |
| SRR2154084 | seedling | wt | 17.97 | HC |
| SRR2154085 | seedling | wt | 23.24 | HC |
| SRR2154087 | seedling | wt | 16.93 | HC |
| SRR2857719 | seedling | drought_stress_0h | 28.98 | HC |
| SRR2857720 | seedling | drought_stress_1h | 4.31 | HC |
| SRR2857721 | seedling | drought_stress_6h | 59.28 | HC |
| SRR358791 | seedling | wt | 9.33 | HC |
| SRR358792 | seedling | wt | 8.36 | HC |
| SRR358793 | seedling | wt | 18.18 | HC |
| SRR358794 | seedling | wt | 16.60 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.19 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.14 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.70 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.08 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 8.75 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 7.63 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.41 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.03 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 13.57 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 11.67 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 10.24 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 9.74 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 9.98 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 11.34 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 4.42 | HC |