| SRR5560728 | caryopsis | wild_type | 5.50 | HC |
| SRR5560729 | caryopsis | wild_type | 9.06 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 6.39 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 6.12 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 5.58 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.81 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 5.93 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 6.98 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 7.10 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 4.32 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 10.31 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 4.79 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 8.30 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 4.76 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 8.79 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 7.76 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 9.31 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 7.57 | HC |
| SRR2338869 | endosprem | high_temperature | 4.78 | HC |
| SRR1213690 | flower | wt(flower buds) | 6.68 | HC |
| SRR1213691 | flower | wt | 8.06 | HC |
| SRR8060835 | leaf | wild_type | 5.25 | HC |
| SRR8060836 | leaf | wild_type | 3.51 | HC |
| SRR8060837 | leaf | wild_type | 5.07 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.62 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 6.33 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 4.92 | HC |
| SRR5856927 | leaf | control | 2.70 | HC |
| SRR5856928 | leaf | control | 2.97 | HC |
| SRR5856929 | leaf | control | 2.72 | HC |
| SRR5856933 | leaf | control | 3.50 | HC |
| SRR5856934 | leaf | control | 4.07 | HC |
| SRR5856935 | leaf | control | 4.21 | HC |
| SRR5856938 | leaf | salt | 1.96 | HC |
| SRR6168973 | leaf | none (control) | 7.73 | HC |
| SRR6168974 | leaf | none (control) | 7.51 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 7.09 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 7.33 | HC |
| SRR5110429 | panicle | Dawn | 6.14 | HC |
| SRR5110432 | panicle | Dawn | 6.50 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.25 | HC |
| SRR5110437 | panicle | Dawn + 7h | 4.53 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 5.98 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 5.23 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 5.22 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 5.66 | HC |
| SRR5110446 | panicle | Dusk | 7.29 | HC |
| SRR5110447 | panicle | Dusk | 6.74 | HC |
| SRR5110448 | panicle | Dusk | 7.75 | HC |
| SRR5110449 | panicle | Dawn + 14h | 7.95 | HC |
| SRR5110451 | panicle | Dawn + 14h | 5.11 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.25 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.86 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.95 | HC |
| SRR5110457 | panicle | Dawn + 21h | 4.72 | HC |
| SRR5110460 | panicle | Dawn + 21h | 5.12 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.97 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 5.31 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.47 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 13.77 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 14.55 | HC |
| SRR5126147 | root | "mock,1_day" | 5.24 | HC |
| SRR5126148 | root | "mock,1_day" | 6.10 | HC |
| SRR5126153 | root | "mock,7_days" | 4.48 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.84 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 4.43 | HC |
| SRR4947491 | root | Al | 5.67 | HC |
| SRR4947493 | root | Al | 6.02 | HC |
| SRR4947501 | root | Al | 6.75 | HC |
| SRR4947505 | root | control | 5.95 | HC |
| SRR4947507 | root | Al | 5.88 | HC |
| SRR4947509 | root | Al | 5.93 | HC |
| SRR6502091 | root | 100 mM NaCl | 7.75 | HC |
| SRR6502092 | root | 100 mM NaCl | 9.28 | HC |
| SRR6502093 | root | 100 mM NaCl | 6.73 | HC |
| SRR6502094 | root | control | 8.35 | HC |
| SRR6502095 | root | control | 10.36 | HC |
| SRR6502096 | root | control | 5.67 | HC |
| SRR6502103 | root | 100 mM NaCl | 9.38 | HC |
| SRR6502104 | root | 100 mM NaCl | 8.54 | HC |
| SRR6502105 | root | 100 mM NaCl | 10.45 | HC |
| SRR6502106 | root | control | 9.31 | HC |
| SRR6502107 | root | control | 7.41 | HC |
| SRR6502108 | root | control | 9.21 | HC |
| SRR1740434 | root_differentiation_zone | wt | 4.93 | HC |
| SRR1740435 | root_differentiation_zone | wt | 5.72 | HC |
| SRR1740436 | root_differentiation_zone | wt | 6.22 | HC |
| SRR1740431 | root_elongation_zone | wt | 8.87 | HC |
| SRR1740432 | root_elongation_zone | wt | 6.36 | HC |
| SRR1740433 | root_elongation_zone | wt | 9.74 | HC |
| SRR1740428 | root_meristematic_zone | wt | 7.94 | HC |
| SRR1740429 | root_meristematic_zone | wt | 5.22 | HC |
| SRR1740430 | root_meristematic_zone | wt | 5.82 | HC |
| SRR2154082 | seedling | wt | 4.24 | HC |
| SRR2154083 | seedling | wt | 3.76 | HC |
| SRR2154084 | seedling | wt | 4.26 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 4.70 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 15.75 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 15.36 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.66 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.31 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 15.57 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 15.23 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 16.21 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 13.53 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 16.47 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 12.47 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 14.55 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 13.32 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 10.59 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 14.41 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 14.25 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 10.97 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 13.14 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 12.71 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 13.57 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 11.61 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 13.35 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 11.06 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 11.83 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 14.61 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 13.10 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 13.27 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 10.64 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 11.94 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 11.72 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 13.34 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 13.80 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 16.00 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 14.43 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 12.19 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 14.01 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 5.83 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.85 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 4.92 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.86 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 4.69 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 4.42 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 4.54 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 5.17 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 4.28 | HC |