| SRR4457249 | 2nd_leaf | DAH4 | 251.29 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 211.93 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 208.68 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 247.87 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 255.24 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 221.62 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 232.29 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 214.66 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 235.87 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 205.33 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 195.75 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 237.21 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 290.98 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 241.72 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 229.55 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 209.65 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 266.05 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 198.11 | HC |
| SRR3745125 | anther | wt | 19.29 | HC |
| SRR3745126 | anther | wt | 23.62 | HC |
| SRR3745127 | anther | wt | 24.16 | HC |
| SRR358795 | callus | wt | 86.92 | HC |
| SRR358796 | callus | wt | 78.44 | HC |
| SRR358797 | callus | wt | 99.78 | HC |
| SRR358798 | callus | wt | 109.15 | HC |
| SRR6320473 | carpel | wt | 154.67 | HC |
| SRR6320498 | carpel | wt | 159.84 | HC |
| SRR5560727 | caryopsis | wild_type | 274.07 | HC |
| SRR5560728 | caryopsis | wild_type | 261.41 | HC |
| SRR5560729 | caryopsis | wild_type | 196.39 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 137.82 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 121.82 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 72.06 | HC |
| SRR4947495 | root | control | 35.91 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 102.74 | HC |
| SRR7265400 | coleoptile | 2dA | 27.76 | HC |
| SRR7265401 | coleoptile | 2dA | 28.45 | HC |
| SRR7265402 | coleoptile | 2dA | 26.04 | HC |
| SRR7265403 | coleoptile | 2dN | 32.09 | HC |
| SRR7265404 | coleoptile | 2dN | 30.90 | HC |
| SRR7265405 | coleoptile | 2dN | 30.61 | HC |
| SRR7265406 | coleoptile | 3dA | 26.13 | HC |
| SRR7265407 | coleoptile | 3dA | 24.14 | HC |
| SRR7265408 | coleoptile | 3dA | 18.21 | HC |
| SRR7265409 | coleoptile | 3dN | 32.24 | HC |
| SRR7265410 | coleoptile | 3dN | 31.97 | HC |
| SRR7265411 | coleoptile | 3dN | 31.88 | HC |
| SRR7265412 | coleoptile | 4dA | 25.83 | HC |
| SRR7265413 | coleoptile | 4dA | 38.52 | HC |
| SRR7265414 | coleoptile | 4dA | 32.63 | HC |
| SRR7265415 | coleoptile | 4dN | 37.18 | HC |
| SRR7265416 | coleoptile | 4dN | 35.23 | HC |
| SRR7265417 | coleoptile | 4dN | 36.78 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 31.85 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 30.23 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 27.34 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 59.94 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 40.67 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 56.04 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 56.87 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 56.80 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 54.55 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 63.55 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 62.28 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 39.89 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 37.53 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 53.00 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 33.65 | HC |
| SRR7265373 | embryo | dry seed 0 h | 39.80 | HC |
| SRR7265374 | embryo | dry seed 0 h | 42.35 | HC |
| SRR7265375 | embryo | dry seed 0 h | 12.74 | HC |
| SRR7265376 | embryo | 1hA | 38.02 | HC |
| SRR7265377 | embryo | 1hA | 38.11 | HC |
| SRR7265378 | embryo | 1hA | 39.69 | HC |
| SRR7265379 | embryo | 1hN | 37.20 | HC |
| SRR7265380 | embryo | 1hN | 39.22 | HC |
| SRR7265381 | embryo | 1hN | 40.30 | HC |
| SRR7265382 | embryo | 3hA | 34.07 | HC |
| SRR7265383 | embryo | 3hA | 39.11 | HC |
| SRR7265384 | embryo | 3hA | 36.13 | HC |
| SRR7265385 | embryo | 3hN | 33.87 | HC |
| SRR7265386 | embryo | 3hN | 33.39 | HC |
| SRR7265387 | embryo | 3hN | 35.32 | HC |
| SRR7265388 | embryo | 12hA | 32.98 | HC |
| SRR7265389 | embryo | 12hA | 36.55 | HC |
| SRR7265390 | embryo | 12hA | 34.61 | HC |
| SRR7265391 | embryo | 12hN | 43.76 | HC |
| SRR7265392 | embryo | 12hN | 38.08 | HC |
| SRR7265393 | embryo | 12hN | 45.19 | HC |
| SRR7265394 | embryo | 24hA | 32.75 | HC |
| SRR7265395 | embryo | 24hA | 33.28 | HC |
| SRR7265396 | embryo | 24hA | 35.06 | HC |
| SRR7265397 | embryo | 24hN | 39.53 | HC |
| SRR7265398 | embryo | 24hN | 34.96 | HC |
| SRR7265399 | embryo | 24hN | 34.55 | HC |
| SRR2338866 | endosprem | control | 31.64 | HC |
| SRR2338867 | endosprem | control | 15.09 | HC |
| SRR2338868 | endosprem | high_temperature | 15.54 | HC |
| SRR2338869 | endosprem | high_temperature | 22.50 | HC |
| SRR976168 | flag_leaf | wild_type | 19.60 | HC |
| SRR4457231 | flag_leaf | DAH4 | 185.13 | HC |
| SRR4457232 | flag_leaf | DAH4 | 194.90 | HC |
| SRR4457233 | flag_leaf | DAH4 | 204.72 | HC |
| SRR4457234 | flag_leaf | DAH12 | 204.27 | HC |
| SRR4457235 | flag_leaf | DAH12 | 190.42 | HC |
| SRR4457236 | flag_leaf | DAH12 | 173.67 | HC |
| SRR4457237 | flag_leaf | DAH20 | 150.44 | HC |
| SRR4457238 | flag_leaf | DAH20 | 152.41 | HC |
| SRR4457239 | flag_leaf | DAH20 | 159.02 | HC |
| SRR4457240 | flag_leaf | DAH28 | 136.14 | HC |
| SRR4457241 | flag_leaf | DAH28 | 128.65 | HC |
| SRR4457242 | flag_leaf | DAH28 | 163.34 | HC |
| SRR4457243 | flag_leaf | DAH36 | 237.39 | HC |
| SRR4457244 | flag_leaf | DAH36 | 193.22 | HC |
| SRR4457245 | flag_leaf | DAH36 | 206.85 | HC |
| SRR4457246 | flag_leaf | DAH44 | 200.37 | HC |
| SRR4457247 | flag_leaf | DAH44 | 199.41 | HC |
| SRR4457248 | flag_leaf | DAH44 | 184.35 | HC |
| SRR1213690 | flower | wt(flower buds) | 78.99 | HC |
| SRR1213691 | flower | wt | 73.97 | HC |
| SRR8060835 | leaf | wild_type | 190.07 | HC |
| SRR8060836 | leaf | wild_type | 200.23 | HC |
| SRR8060837 | leaf | wild_type | 190.23 | HC |
| SRR8240824 | leaf | wild_type | 134.60 | HC |
| SRR8240825 | leaf | wild_type | 127.40 | HC |
| SRR8240826 | leaf | wild_type | 118.39 | HC |
| SRR8240818 | leaf | wild_type | 89.66 | HC |
| SRR8240819 | leaf | wild_type | 122.97 | HC |
| SRR8240820 | leaf | wild_type | 132.35 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 129.87 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 147.18 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 117.29 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 130.27 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 230.68 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 187.30 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 191.56 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 177.47 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 166.47 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 183.31 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 197.52 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 177.00 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 170.22 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 268.69 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 176.63 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 207.37 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 184.32 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 176.11 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 161.03 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 199.64 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 171.31 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 185.84 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 221.07 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 200.05 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 179.24 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 285.83 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 184.12 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 174.30 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 283.49 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 146.21 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 170.72 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 201.59 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 223.76 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 164.09 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 194.85 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 160.78 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 174.43 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 242.69 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 216.66 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 224.64 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 151.42 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 173.60 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 275.90 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 270.50 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 151.41 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 173.60 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 275.90 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 270.50 | HC |
| SRR1761528 | leaf | drought | 151.41 | HC |
| SRR1761529 | leaf | drought | 173.61 | HC |
| SRR1761530 | leaf | control | 275.91 | HC |
| SRR1761531 | leaf | control | 270.50 | HC |
| SRR504365 | leaf | wt | 322.74 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 84.22 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 70.24 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 108.71 | HC |
| SRR6417967 | leaf | H2O_control | 150.69 | HC |
| SRR6417968 | leaf | H2O_control | 118.16 | HC |
| SRR6417969 | leaf | H2O_control | 165.52 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 125.77 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 125.64 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 108.19 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 120.56 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 125.33 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 121.77 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 107.39 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 93.99 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 123.90 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 103.70 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 125.76 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 140.75 | HC |
| SRR8611900 | leaf | Non-inoculated | 218.61 | HC |
| SRR8611901 | leaf | Non-inoculated | 210.80 | HC |
| SRR8611902 | leaf | Non-inoculated | 208.88 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 291.73 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 293.25 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 306.38 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 115.90 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 125.05 | HC |
| SRR1213692 | leaf | wt | 133.79 | HC |
| SRR1213693 | leaf | wt | 120.16 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 178.09 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 146.88 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 165.99 | HC |
| SRR6502088 | leaf | control | 165.58 | HC |
| SRR6502089 | leaf | control | 165.35 | HC |
| SRR6502090 | leaf | control | 137.66 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 193.06 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 174.20 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 198.31 | HC |
| SRR6502100 | leaf | control | 194.61 | HC |
| SRR6502101 | leaf | control | 171.65 | HC |
| SRR6502102 | leaf | control | 176.44 | HC |
| SRR5856927 | leaf | control | 34.18 | HC |
| SRR5856928 | leaf | control | 33.15 | HC |
| SRR5856929 | leaf | control | 33.10 | HC |
| SRR5856930 | leaf | salt | 29.83 | HC |
| SRR5856931 | leaf | salt | 31.55 | HC |
| SRR5856932 | leaf | salt | 28.25 | HC |
| SRR5856933 | leaf | control | 40.92 | HC |
| SRR5856934 | leaf | control | 34.20 | HC |
| SRR5856935 | leaf | control | 52.03 | HC |
| SRR5856936 | leaf | salt | 39.19 | HC |
| SRR5856937 | leaf | salt | 38.64 | HC |
| SRR5856938 | leaf | salt | 39.78 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 154.01 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 148.48 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 180.29 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 149.79 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 145.95 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 145.74 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 163.00 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 152.17 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 156.42 | HC |
| SRR6168973 | leaf | none (control) | 216.13 | HC |
| SRR6168974 | leaf | none (control) | 204.89 | HC |
| SRR6168975 | leaf | none (control) | 204.57 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 336.82 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 46.44 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 417.94 | HC |
| SRR6168979 | leaf | none (control) | 52.79 | HC |
| SRR6168980 | leaf | none (control) | 69.11 | HC |
| SRR6168981 | leaf | none (control) | 148.45 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 180.35 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 205.90 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 194.70 | HC |
| SRR8582888 | panicle | AM | 193.73 | HC |
| SRR8582889 | panicle | AM | 136.45 | HC |
| SRR8582890 | panicle | AM | 190.86 | HC |
| SRR8582891 | panicle | PM | 277.50 | HC |
| SRR8582892 | panicle | PM | 327.53 | HC |
| SRR8582893 | panicle | PM | 319.67 | HC |
| SRR5110429 | panicle | Dawn | 100.23 | HC |
| SRR5110430 | panicle | Dawn | 133.51 | HC |
| SRR5110431 | panicle | Dawn | 106.96 | HC |
| SRR5110432 | panicle | Dawn | 49.25 | HC |
| SRR4947496 | root | control | 44.07 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 84.64 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 63.78 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 66.04 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 42.38 | HC |
| SRR5110437 | panicle | Dawn + 7h | 61.81 | HC |
| SRR5110438 | panicle | Dawn + 7h | 73.06 | HC |
| SRR5110439 | panicle | Dawn + 7h | 89.49 | HC |
| SRR5110440 | panicle | Dawn + 7h | 57.68 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 60.57 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 63.48 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 75.26 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 74.94 | HC |
| SRR5110445 | panicle | Dusk | 83.48 | HC |
| SRR5110446 | panicle | Dusk | 83.86 | HC |
| SRR5110447 | panicle | Dusk | 90.43 | HC |
| SRR5110448 | panicle | Dusk | 88.38 | HC |
| SRR5110449 | panicle | Dawn + 14h | 110.37 | HC |
| SRR5110450 | panicle | Dawn + 14h | 82.85 | HC |
| SRR5110451 | panicle | Dawn + 14h | 91.83 | HC |
| SRR5110452 | panicle | Dawn + 14h | 97.81 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 74.02 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 64.57 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 83.36 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 82.83 | HC |
| SRR5110457 | panicle | Dawn + 21h | 52.66 | HC |
| SRR5110458 | panicle | Dawn + 21h | 56.35 | HC |
| SRR5110459 | panicle | Dawn + 21h | 61.77 | HC |
| SRR5110460 | panicle | Dawn + 21h | 100.46 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 40.40 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 19.93 | HC |
| SRR1633182 | panicle | WT | 87.87 | HC |
| SRR1633185 | panicle | WT | 124.08 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 192.05 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 194.82 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 231.60 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 240.23 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 302.76 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 296.08 | HC |
| SRR5126147 | root | "mock,1_day" | 57.26 | HC |
| SRR5126148 | root | "mock,1_day" | 42.34 | HC |
| SRR5126149 | root | "mock,1_day" | 72.86 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 80.45 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 86.00 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 55.11 | HC |
| SRR5126153 | root | "mock,7_days" | 102.42 | HC |
| SRR5126155 | root | "mock,7_days" | 120.39 | HC |
| SRR5126157 | root | "mock,7_days" | 196.48 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 121.24 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 143.92 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 111.05 | HC |
| SRR5126165 | root | "mock,14_days" | 103.24 | HC |
| SRR5126167 | root | "mock,14_days" | 92.27 | HC |
| SRR5126169 | root | "mock,14_days" | 138.15 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 127.79 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 117.23 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 195.23 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 15.21 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 15.83 | HC |
| SRR1213694 | root | wt | 38.88 | HC |
| SRR1213695 | root | wt | 160.09 | HC |
| SRR4947478 | root | control | 35.74 | HC |
| SRR4947479 | root | control | 30.97 | HC |
| SRR4947480 | root | control | 50.06 | HC |
| SRR4947481 | root | control | 70.98 | HC |
| SRR4947482 | root | Al | 23.90 | HC |
| SRR4947483 | root | Al | 29.91 | HC |
| SRR4947484 | root | Al | 48.74 | HC |
| SRR4947485 | root | Al | 62.87 | HC |
| SRR4947487 | root | control | 32.05 | HC |
| SRR4947488 | root | control | 48.88 | HC |
| SRR4947489 | root | control | 57.82 | HC |
| SRR4947490 | root | Al | 37.39 | HC |
| SRR4947491 | root | Al | 39.23 | HC |
| SRR4947492 | root | Al | 51.41 | HC |
| SRR4947493 | root | Al | 49.27 | HC |
| SRR4947494 | root | control | 27.37 | HC |
| SRR4947497 | root | control | 64.10 | HC |
| SRR4947498 | root | Al | 44.17 | HC |
| SRR4947499 | root | Al | 33.29 | HC |
| SRR4947500 | root | Al | 51.09 | HC |
| SRR4947501 | root | Al | 63.03 | HC |
| SRR4947502 | root | control | 38.27 | HC |
| SRR4947503 | root | control | 33.50 | HC |
| SRR4947504 | root | control | 41.82 | HC |
| SRR4947505 | root | control | 48.95 | HC |
| SRR4947506 | root | Al | 26.82 | HC |
| SRR4947507 | root | Al | 35.20 | HC |
| SRR4947508 | root | Al | 39.84 | HC |
| SRR4947509 | root | Al | 37.32 | HC |
| SRR6502091 | root | 100 mM NaCl | 75.94 | HC |
| SRR6502092 | root | 100 mM NaCl | 90.42 | HC |
| SRR6502093 | root | 100 mM NaCl | 87.89 | HC |
| SRR6502094 | root | control | 72.90 | HC |
| SRR6502095 | root | control | 66.69 | HC |
| SRR6502096 | root | control | 51.75 | HC |
| SRR6502103 | root | 100 mM NaCl | 73.34 | HC |
| SRR6502104 | root | 100 mM NaCl | 75.79 | HC |
| SRR6502105 | root | 100 mM NaCl | 89.36 | HC |
| SRR6502106 | root | control | 58.17 | HC |
| SRR6502107 | root | control | 58.71 | HC |
| SRR6502108 | root | control | 54.16 | HC |
| SRR1740434 | root_differentiation_zone | wt | 24.60 | HC |
| SRR1740435 | root_differentiation_zone | wt | 19.66 | HC |
| SRR1740436 | root_differentiation_zone | wt | 28.43 | HC |
| SRR1740431 | root_elongation_zone | wt | 17.83 | HC |
| SRR1740432 | root_elongation_zone | wt | 31.15 | HC |
| SRR1740433 | root_elongation_zone | wt | 26.12 | HC |
| SRR1740428 | root_meristematic_zone | wt | 21.59 | HC |
| SRR1740429 | root_meristematic_zone | wt | 28.35 | HC |
| SRR1740430 | root_meristematic_zone | wt | 30.67 | HC |
| SRR6441554 | seedling | wild_type | 105.97 | HC |
| SRR6441555 | seedling | wild_type | 120.55 | HC |
| SRR2154086 | seedling | wt | 133.30 | HC |
| SRR2154082 | seedling | wt | 99.35 | HC |
| SRR2154083 | seedling | wt | 85.66 | HC |
| SRR2154085 | seedling | wt | 124.56 | HC |
| SRR2154087 | seedling | wt | 121.95 | HC |
| SRR3098741 | seedling | wt | 128.57 | HC |
| SRR3098742 | seedling | wt | 134.47 | HC |
| SRR3098743 | seedling | wt | 135.25 | HC |
| SRR2857719 | seedling | drought_stress_0h | 102.36 | HC |
| SRR2857720 | seedling | drought_stress_1h | 121.93 | HC |
| SRR2857721 | seedling | drought_stress_6h | 98.59 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 151.94 | HC |
| SRR1944583 | seedling | no_treatment | 153.99 | HC |
| SRR358791 | seedling | wt | 199.43 | HC |
| SRR358792 | seedling | wt | 204.18 | HC |
| SRR358793 | seedling | wt | 267.79 | HC |
| SRR358794 | seedling | wt | 253.94 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 49.73 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 64.08 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 57.40 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 54.73 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 15.73 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 57.26 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 51.13 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 31.96 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 31.90 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 60.74 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 56.82 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 50.70 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 56.32 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 53.47 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 67.40 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 81.71 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 89.20 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 130.19 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 157.53 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 132.24 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 114.20 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 125.99 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 137.69 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 131.71 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 125.80 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 151.39 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 143.12 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 145.72 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 132.69 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 133.95 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 122.48 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 211.19 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 219.74 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 123.45 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 122.16 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 103.63 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 113.58 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 96.14 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 96.15 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 108.53 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 103.72 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 216.66 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 198.35 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 123.50 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 117.23 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 122.21 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 240.05 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 191.38 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 199.73 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 167.21 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 137.66 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 158.08 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 118.20 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 126.16 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 135.92 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 147.12 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 156.26 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 165.55 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 171.94 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 191.91 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 148.00 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 173.00 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 169.93 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 181.81 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 190.85 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 217.83 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 48.96 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 49.11 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 79.35 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 88.32 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 58.13 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 47.71 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 53.32 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 42.72 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 94.79 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 73.49 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 62.58 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 88.25 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 60.82 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 85.05 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 62.03 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 67.51 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 67.51 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 59.95 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 58.95 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 52.21 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 44.09 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 53.18 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 52.63 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 41.97 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 59.04 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 48.02 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 43.75 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 40.26 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 40.72 | HC |