| SRR4457250 | 2nd_leaf | DAH4 | 6.20 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 5.91 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 4.39 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.99 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 4.03 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 5.16 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 5.34 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.95 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 5.85 | HC |
| SRR358795 | callus | wt | 11.67 | HC |
| SRR358796 | callus | wt | 11.51 | HC |
| SRR358797 | callus | wt | 13.08 | HC |
| SRR358798 | callus | wt | 14.75 | HC |
| SRR5560727 | caryopsis | wild_type | 8.97 | HC |
| SRR5560728 | caryopsis | wild_type | 12.21 | HC |
| SRR5560729 | caryopsis | wild_type | 11.81 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 5.43 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.94 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 4.11 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 7.06 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 6.84 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 7.11 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 7.35 | HC |
| SRR7265373 | embryo | dry seed 0 h | 4.94 | HC |
| SRR7265374 | embryo | dry seed 0 h | 4.97 | HC |
| SRR7265376 | embryo | 1hA | 3.77 | HC |
| SRR7265378 | embryo | 1hA | 3.72 | HC |
| SRR7265379 | embryo | 1hN | 4.69 | HC |
| SRR7265380 | embryo | 1hN | 4.11 | HC |
| SRR7265381 | embryo | 1hN | 4.07 | HC |
| SRR7265383 | embryo | 3hA | 5.69 | HC |
| SRR7265384 | embryo | 3hA | 4.84 | HC |
| SRR7265387 | embryo | 3hN | 3.38 | HC |
| SRR7265388 | embryo | 12hA | 5.31 | HC |
| SRR7265389 | embryo | 12hA | 6.23 | HC |
| SRR7265390 | embryo | 12hA | 5.69 | HC |
| SRR7265391 | embryo | 12hN | 5.89 | HC |
| SRR7265394 | embryo | 24hA | 5.35 | HC |
| SRR7265395 | embryo | 24hA | 5.62 | HC |
| SRR2338866 | endosprem | control | 5.10 | HC |
| SRR2338867 | endosprem | control | 2.49 | HC |
| SRR2338868 | endosprem | high_temperature | 2.96 | HC |
| SRR2338869 | endosprem | high_temperature | 5.27 | HC |
| SRR4457231 | flag_leaf | DAH4 | 3.73 | HC |
| SRR4457232 | flag_leaf | DAH4 | 4.69 | HC |
| SRR4457233 | flag_leaf | DAH4 | 4.73 | HC |
| SRR4457237 | flag_leaf | DAH20 | 3.14 | HC |
| SRR4457245 | flag_leaf | DAH36 | 5.02 | HC |
| SRR4457246 | flag_leaf | DAH44 | 4.65 | HC |
| SRR1213690 | flower | wt(flower buds) | 9.08 | HC |
| SRR1213691 | flower | wt | 7.73 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.48 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 6.42 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 5.31 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.66 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.60 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.30 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.34 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.07 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.13 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.28 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.58 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 9.50 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 7.94 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 7.69 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.77 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.33 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.91 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 7.33 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 5.52 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.35 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.15 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.86 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 12.24 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.75 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 9.51 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.72 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 7.99 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.73 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.05 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 7.45 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.86 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 11.43 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 11.47 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 9.15 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 7.88 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 6.77 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 7.61 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 9.01 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 7.88 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 6.77 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 7.61 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 9.01 | HC |
| SRR1761528 | leaf | drought | 7.88 | HC |
| SRR1761529 | leaf | drought | 6.78 | HC |
| SRR1761530 | leaf | control | 7.61 | HC |
| SRR1761531 | leaf | control | 9.01 | HC |
| SRR504365 | leaf | wt | 7.31 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 9.65 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 8.22 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 8.38 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 7.35 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 9.69 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 9.32 | HC |
| SRR8611900 | leaf | Non-inoculated | 7.02 | HC |
| SRR8611901 | leaf | Non-inoculated | 6.31 | HC |
| SRR8611902 | leaf | Non-inoculated | 5.31 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 4.87 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 5.10 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 5.76 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 6.28 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 6.45 | HC |
| SRR1213692 | leaf | wt | 6.66 | HC |
| SRR1213693 | leaf | wt | 7.67 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 5.29 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 4.77 | HC |
| SRR6502088 | leaf | control | 4.37 | HC |
| SRR6502090 | leaf | control | 4.97 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 7.07 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 6.35 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 4.95 | HC |
| SRR6502100 | leaf | control | 6.12 | HC |
| SRR6502101 | leaf | control | 5.01 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 7.51 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 3.09 | HC |
| SRR8582890 | panicle | AM | 2.71 | HC |
| SRR8582891 | panicle | PM | 6.00 | HC |
| SRR8582892 | panicle | PM | 8.51 | HC |
| SRR8582893 | panicle | PM | 6.27 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.85 | HC |
| SRR1633185 | panicle | WT | 8.43 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.77 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 6.87 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 9.16 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 10.13 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 22.76 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 18.01 | HC |
| SRR5126147 | root | "mock,1_day" | 6.80 | HC |
| SRR5126148 | root | "mock,1_day" | 6.20 | HC |
| SRR5126149 | root | "mock,1_day" | 5.70 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 6.67 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 7.70 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 7.16 | HC |
| SRR5126153 | root | "mock,7_days" | 6.18 | HC |
| SRR5126155 | root | "mock,7_days" | 7.61 | HC |
| SRR5126157 | root | "mock,7_days" | 8.37 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 8.49 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 9.80 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 10.16 | HC |
| SRR5126165 | root | "mock,14_days" | 7.28 | HC |
| SRR5126167 | root | "mock,14_days" | 6.46 | HC |
| SRR5126169 | root | "mock,14_days" | 7.60 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 10.13 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 10.83 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 9.46 | HC |
| SRR1213694 | root | wt | 3.67 | HC |
| SRR1213695 | root | wt | 7.16 | HC |
| SRR4947501 | root | Al | 6.29 | HC |
| SRR6502091 | root | 100 mM NaCl | 5.50 | HC |
| SRR6502092 | root | 100 mM NaCl | 5.56 | HC |
| SRR6502093 | root | 100 mM NaCl | 6.17 | HC |
| SRR6502094 | root | control | 5.69 | HC |
| SRR6502095 | root | control | 5.11 | HC |
| SRR6502103 | root | 100 mM NaCl | 7.39 | HC |
| SRR6502104 | root | 100 mM NaCl | 7.60 | HC |
| SRR6502105 | root | 100 mM NaCl | 7.28 | HC |
| SRR6502106 | root | control | 5.55 | HC |
| SRR6502107 | root | control | 6.03 | HC |
| SRR6502108 | root | control | 6.98 | HC |
| SRR1740436 | root_differentiation_zone | wt | 4.18 | HC |
| SRR1740432 | root_elongation_zone | wt | 4.55 | HC |
| SRR1740433 | root_elongation_zone | wt | 3.63 | HC |
| SRR1740429 | root_meristematic_zone | wt | 8.23 | HC |
| SRR1740430 | root_meristematic_zone | wt | 7.85 | HC |
| SRR6441554 | seedling | wild_type | 3.34 | HC |
| SRR2154086 | seedling | wt | 6.91 | HC |
| SRR2154085 | seedling | wt | 7.34 | HC |
| SRR2154087 | seedling | wt | 7.64 | HC |
| SRR3098741 | seedling | wt | 5.21 | HC |
| SRR3098742 | seedling | wt | 5.30 | HC |
| SRR3098743 | seedling | wt | 3.97 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.06 | HC |
| SRR2857720 | seedling | drought_stress_1h | 4.50 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.93 | HC |
| SRR358791 | seedling | wt | 8.03 | HC |
| SRR358792 | seedling | wt | 8.65 | HC |
| SRR358794 | seedling | wt | 6.93 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 4.78 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 5.10 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 6.95 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 3.14 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 4.24 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 3.48 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.29 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 4.10 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.58 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.45 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.95 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.00 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.57 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.72 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.66 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.44 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 16.26 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 15.67 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 19.11 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 16.26 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 20.37 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 19.01 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 22.04 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 19.44 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 16.11 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 13.74 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 13.68 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 16.12 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 20.39 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 17.62 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 17.48 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 17.35 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 20.25 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 19.96 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 23.33 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 23.05 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 21.79 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 21.00 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 20.36 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 13.76 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 14.65 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 10.72 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 8.61 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 13.80 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 9.53 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 9.49 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 16.63 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 14.12 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 16.09 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 7.06 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 5.67 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 6.68 | HC |