| SRR358795 | callus | wt | 12.70 | HC |
| SRR358796 | callus | wt | 11.57 | HC |
| SRR358797 | callus | wt | 14.28 | HC |
| SRR358798 | callus | wt | 14.66 | HC |
| SRR5560727 | caryopsis | wild_type | 15.14 | HC |
| SRR5560728 | caryopsis | wild_type | 13.49 | HC |
| SRR5560729 | caryopsis | wild_type | 17.37 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 7.87 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 6.45 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 6.39 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 6.68 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 7.92 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 7.28 | HC |
| SRR2338868 | endosprem | high_temperature | 3.36 | HC |
| SRR2338869 | endosprem | high_temperature | 3.80 | HC |
| SRR1213690 | flower | wt(flower buds) | 7.25 | HC |
| SRR1213691 | flower | wt | 11.32 | HC |
| SRR8240826 | leaf | wild_type | 2.40 | HC |
| SRR8240818 | leaf | wild_type | 2.42 | HC |
| SRR8240819 | leaf | wild_type | 4.45 | HC |
| SRR8240820 | leaf | wild_type | 4.88 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.23 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 5.83 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 6.25 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 6.91 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.73 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.55 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.13 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.16 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.62 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.99 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.74 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 10.38 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.40 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.36 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.93 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.44 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.96 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 5.61 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.27 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.42 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.02 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.80 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.91 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 8.30 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.22 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 7.78 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.32 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.50 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.02 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.43 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.08 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 7.84 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 8.52 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 6.95 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 8.77 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 9.91 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 8.61 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 9.05 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 8.77 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 9.91 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 8.61 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 9.05 | HC |
| SRR1761528 | leaf | drought | 8.77 | HC |
| SRR1761529 | leaf | drought | 9.91 | HC |
| SRR1761530 | leaf | control | 8.61 | HC |
| SRR1761531 | leaf | control | 9.05 | HC |
| SRR504365 | leaf | wt | 6.86 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.28 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.38 | HC |
| SRR6417967 | leaf | H2O_control | 5.31 | HC |
| SRR6417969 | leaf | H2O_control | 4.83 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 3.48 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 3.91 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 4.44 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 5.05 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 4.11 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 4.60 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 4.74 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 5.53 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.18 | HC |
| SRR8611900 | leaf | Non-inoculated | 7.74 | HC |
| SRR8611901 | leaf | Non-inoculated | 7.67 | HC |
| SRR8611902 | leaf | Non-inoculated | 7.15 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 5.41 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 4.75 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 6.13 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 8.29 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 8.70 | HC |
| SRR1213692 | leaf | wt | 10.77 | HC |
| SRR1213693 | leaf | wt | 9.49 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 6.95 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 6.37 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 7.43 | HC |
| SRR6502088 | leaf | control | 7.44 | HC |
| SRR6502089 | leaf | control | 6.62 | HC |
| SRR6502090 | leaf | control | 4.82 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 6.07 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 7.09 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 4.74 | HC |
| SRR6502100 | leaf | control | 4.64 | HC |
| SRR6502101 | leaf | control | 5.10 | HC |
| SRR6502102 | leaf | control | 4.89 | HC |
| SRR8582888 | panicle | AM | 4.20 | HC |
| SRR8582889 | panicle | AM | 3.28 | HC |
| SRR8582890 | panicle | AM | 4.18 | HC |
| SRR8582891 | panicle | PM | 7.78 | HC |
| SRR8582892 | panicle | PM | 9.10 | HC |
| SRR8582893 | panicle | PM | 8.13 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.86 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 15.26 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 17.26 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 13.59 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 15.78 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 20.67 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 16.71 | HC |
| SRR5126147 | root | "mock,1_day" | 9.90 | HC |
| SRR5126148 | root | "mock,1_day" | 8.23 | HC |
| SRR5126149 | root | "mock,1_day" | 14.05 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 18.21 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 18.45 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 10.89 | HC |
| SRR5126153 | root | "mock,7_days" | 9.06 | HC |
| SRR5126155 | root | "mock,7_days" | 10.18 | HC |
| SRR5126157 | root | "mock,7_days" | 15.01 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 19.34 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 21.67 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 14.99 | HC |
| SRR5126165 | root | "mock,14_days" | 9.39 | HC |
| SRR5126167 | root | "mock,14_days" | 15.05 | HC |
| SRR5126169 | root | "mock,14_days" | 14.78 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 18.21 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 23.85 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 12.41 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 4.14 | HC |
| SRR1213694 | root | wt | 17.84 | HC |
| SRR1213695 | root | wt | 13.05 | HC |
| SRR6502091 | root | 100 mM NaCl | 9.34 | HC |
| SRR6502092 | root | 100 mM NaCl | 9.81 | HC |
| SRR6502093 | root | 100 mM NaCl | 9.07 | HC |
| SRR6502094 | root | control | 6.88 | HC |
| SRR6502095 | root | control | 7.55 | HC |
| SRR6502096 | root | control | 5.74 | HC |
| SRR6502103 | root | 100 mM NaCl | 9.30 | HC |
| SRR6502104 | root | 100 mM NaCl | 9.68 | HC |
| SRR6502105 | root | 100 mM NaCl | 8.30 | HC |
| SRR6502106 | root | control | 7.71 | HC |
| SRR6502107 | root | control | 6.35 | HC |
| SRR6502108 | root | control | 6.61 | HC |
| SRR1740434 | root_differentiation_zone | wt | 6.98 | HC |
| SRR6441554 | seedling | wild_type | 4.67 | HC |
| SRR6441555 | seedling | wild_type | 5.95 | HC |
| SRR2154086 | seedling | wt | 8.24 | HC |
| SRR2154085 | seedling | wt | 8.57 | HC |
| SRR2154087 | seedling | wt | 7.56 | HC |
| SRR3098741 | seedling | wt | 5.28 | HC |
| SRR3098742 | seedling | wt | 3.96 | HC |
| SRR3098743 | seedling | wt | 4.23 | HC |
| SRR2857719 | seedling | drought_stress_0h | 8.09 | HC |
| SRR2857720 | seedling | drought_stress_1h | 7.37 | HC |
| SRR2857721 | seedling | drought_stress_6h | 5.39 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.51 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.27 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.69 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 3.21 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.44 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 3.29 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 5.02 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 5.61 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.54 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 8.78 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.27 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 7.01 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 7.13 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.89 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 7.47 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 8.40 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.99 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 6.34 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 4.82 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.77 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.35 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.57 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.61 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.30 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.90 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 14.28 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 13.32 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 14.31 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 14.90 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 17.79 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 16.91 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 13.10 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 14.78 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 14.05 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 11.08 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 11.20 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 12.85 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 14.18 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 14.39 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 15.82 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 17.52 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 16.08 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 12.22 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 17.06 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 18.76 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 16.07 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 18.55 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 22.92 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 8.12 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 10.39 | HC |