| SRR4457249 | 2nd_leaf | DAH4 | 105.80 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 105.64 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 111.93 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 148.02 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 100.12 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 122.21 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 195.69 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 138.08 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 125.10 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 230.51 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 249.20 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 214.98 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 122.73 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 116.91 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 69.54 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 240.18 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 116.45 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 327.59 | HC |
| SRR358795 | callus | wt | 17.82 | HC |
| SRR358796 | callus | wt | 16.28 | HC |
| SRR358797 | callus | wt | 17.39 | HC |
| SRR358798 | callus | wt | 17.69 | HC |
| SRR5560727 | caryopsis | wild_type | 5.56 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 9.17 | HC |
| SRR976168 | flag_leaf | wild_type | 3.26 | HC |
| SRR4457231 | flag_leaf | DAH4 | 47.91 | HC |
| SRR4457232 | flag_leaf | DAH4 | 61.80 | HC |
| SRR4457233 | flag_leaf | DAH4 | 66.48 | HC |
| SRR4457234 | flag_leaf | DAH12 | 113.11 | HC |
| SRR4457235 | flag_leaf | DAH12 | 152.19 | HC |
| SRR4457236 | flag_leaf | DAH12 | 166.28 | HC |
| SRR4457237 | flag_leaf | DAH20 | 310.21 | HC |
| SRR4457238 | flag_leaf | DAH20 | 271.14 | HC |
| SRR4457239 | flag_leaf | DAH20 | 253.11 | HC |
| SRR4457240 | flag_leaf | DAH28 | 697.04 | HC |
| SRR4457241 | flag_leaf | DAH28 | 703.07 | HC |
| SRR4457242 | flag_leaf | DAH28 | 711.19 | HC |
| SRR4457243 | flag_leaf | DAH36 | 107.68 | HC |
| SRR4457244 | flag_leaf | DAH36 | 84.41 | HC |
| SRR4457245 | flag_leaf | DAH36 | 101.50 | HC |
| SRR4457246 | flag_leaf | DAH44 | 308.69 | HC |
| SRR4457247 | flag_leaf | DAH44 | 188.36 | HC |
| SRR4457248 | flag_leaf | DAH44 | 261.38 | HC |
| SRR8240824 | leaf | wild_type | 9.41 | HC |
| SRR8240825 | leaf | wild_type | 20.47 | HC |
| SRR8240826 | leaf | wild_type | 7.83 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 7.63 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 15.63 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 12.56 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 18.25 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 19.89 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 25.15 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 13.56 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 9.23 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 11.13 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 11.96 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 10.37 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 11.91 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 24.90 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 24.77 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 23.27 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.27 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 39.61 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 18.95 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.77 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 10.54 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 57.65 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 31.61 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 20.24 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 17.46 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 93.71 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 19.80 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 67.87 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 52.09 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 28.65 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 6.82 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 44.15 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 14.91 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 11.87 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 17.89 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 44.14 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 14.91 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 11.87 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 17.89 | HC |
| SRR1761528 | leaf | drought | 44.14 | HC |
| SRR1761529 | leaf | drought | 14.91 | HC |
| SRR1761530 | leaf | control | 11.87 | HC |
| SRR1761531 | leaf | control | 17.89 | HC |
| SRR504365 | leaf | wt | 71.42 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 17.67 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 22.99 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 15.52 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 18.68 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 12.81 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 14.81 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 40.43 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 11.62 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 60.42 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 23.21 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 31.21 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 23.49 | HC |
| SRR8611900 | leaf | Non-inoculated | 34.19 | HC |
| SRR8611901 | leaf | Non-inoculated | 35.74 | HC |
| SRR8611902 | leaf | Non-inoculated | 34.62 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 137.42 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 145.25 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 134.10 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 13.64 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 14.03 | HC |
| SRR1213692 | leaf | wt | 238.55 | HC |
| SRR1213693 | leaf | wt | 2275.82 | HC |
| SRR6168979 | leaf | none (control) | 5.68 | HC |
| SRR6168980 | leaf | none (control) | 2.82 | HC |
| SRR6168981 | leaf | none (control) | 6.31 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 4.61 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 5.98 | HC |
| SRR5126149 | root | "mock,1_day" | 35.53 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 132.99 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 159.85 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 60.14 | HC |
| SRR5126153 | root | "mock,7_days" | 15.23 | HC |
| SRR5126155 | root | "mock,7_days" | 36.97 | HC |
| SRR5126157 | root | "mock,7_days" | 19.15 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 188.06 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 128.95 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 96.95 | HC |
| SRR5126165 | root | "mock,14_days" | 44.28 | HC |
| SRR5126167 | root | "mock,14_days" | 37.44 | HC |
| SRR5126169 | root | "mock,14_days" | 33.80 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 129.88 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 174.52 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 111.27 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 37.32 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 11.95 | HC |
| SRR1213694 | root | wt | 150.11 | HC |
| SRR1213695 | root | wt | 2000.19 | HC |
| SRR6441554 | seedling | wild_type | 9.71 | HC |
| SRR6441555 | seedling | wild_type | 11.09 | HC |
| SRR2154086 | seedling | wt | 21.64 | HC |
| SRR2154085 | seedling | wt | 40.18 | HC |
| SRR2154087 | seedling | wt | 14.61 | HC |
| SRR3098741 | seedling | wt | 60.85 | HC |
| SRR3098742 | seedling | wt | 12.71 | HC |
| SRR3098743 | seedling | wt | 34.55 | HC |
| SRR2857719 | seedling | drought_stress_0h | 21.63 | HC |
| SRR2857720 | seedling | drought_stress_1h | 33.45 | HC |
| SRR2857721 | seedling | drought_stress_6h | 9.59 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 34.16 | HC |
| SRR1944583 | seedling | no_treatment | 5.52 | HC |
| SRR358791 | seedling | wt | 181.57 | HC |
| SRR358792 | seedling | wt | 190.08 | HC |
| SRR358793 | seedling | wt | 58.48 | HC |
| SRR358794 | seedling | wt | 57.20 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.67 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 8.39 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 12.86 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 12.22 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.07 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.56 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 9.11 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.90 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 19.31 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 9.79 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 70.51 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 59.63 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 61.13 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 85.91 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 169.38 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 162.61 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 8.39 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 12.33 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 10.54 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 11.63 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.96 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 5.97 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.81 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 24.15 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 10.71 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 8.28 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 4.53 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.32 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 37.09 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 42.38 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 27.68 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 29.89 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 23.02 | HC |