| SRR3745126 | anther | wt | 5.68 | HC |
| SRR358795 | callus | wt | 46.31 | HC |
| SRR358796 | callus | wt | 32.45 | HC |
| SRR358797 | callus | wt | 38.41 | HC |
| SRR358798 | callus | wt | 34.52 | HC |
| SRR5560727 | caryopsis | wild_type | 16.15 | HC |
| SRR5560728 | caryopsis | wild_type | 13.19 | HC |
| SRR5560729 | caryopsis | wild_type | 25.20 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 19.29 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 29.69 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 15.95 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 20.66 | HC |
| SRR7265400 | coleoptile | 2dA | 93.15 | HC |
| SRR7265401 | coleoptile | 2dA | 95.55 | HC |
| SRR7265402 | coleoptile | 2dA | 87.17 | HC |
| SRR7265403 | coleoptile | 2dN | 95.63 | HC |
| SRR7265404 | coleoptile | 2dN | 78.99 | HC |
| SRR7265405 | coleoptile | 2dN | 81.59 | HC |
| SRR7265406 | coleoptile | 3dA | 39.47 | HC |
| SRR7265407 | coleoptile | 3dA | 33.35 | HC |
| SRR7265408 | coleoptile | 3dA | 20.96 | HC |
| SRR7265409 | coleoptile | 3dN | 64.25 | HC |
| SRR7265410 | coleoptile | 3dN | 54.65 | HC |
| SRR7265411 | coleoptile | 3dN | 56.50 | HC |
| SRR7265412 | coleoptile | 4dA | 7.35 | HC |
| SRR7265413 | coleoptile | 4dA | 9.44 | HC |
| SRR7265414 | coleoptile | 4dA | 7.50 | HC |
| SRR7265415 | coleoptile | 4dN | 47.42 | HC |
| SRR7265416 | coleoptile | 4dN | 39.24 | HC |
| SRR7265417 | coleoptile | 4dN | 36.55 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 49.70 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 46.17 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 42.87 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 20.39 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 21.17 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 13.54 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 14.67 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 19.01 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 25.12 | HC |
| SRR7265373 | embryo | dry seed 0 h | 40.16 | HC |
| SRR7265374 | embryo | dry seed 0 h | 39.48 | HC |
| SRR7265375 | embryo | dry seed 0 h | 9.13 | HC |
| SRR7265376 | embryo | 1hA | 29.35 | HC |
| SRR7265377 | embryo | 1hA | 32.26 | HC |
| SRR7265378 | embryo | 1hA | 34.49 | HC |
| SRR7265379 | embryo | 1hN | 33.49 | HC |
| SRR7265380 | embryo | 1hN | 37.24 | HC |
| SRR7265381 | embryo | 1hN | 35.59 | HC |
| SRR7265382 | embryo | 3hA | 41.07 | HC |
| SRR7265383 | embryo | 3hA | 33.05 | HC |
| SRR7265384 | embryo | 3hA | 34.93 | HC |
| SRR7265385 | embryo | 3hN | 39.83 | HC |
| SRR7265386 | embryo | 3hN | 34.76 | HC |
| SRR7265387 | embryo | 3hN | 34.27 | HC |
| SRR7265388 | embryo | 12hA | 172.80 | HC |
| SRR7265389 | embryo | 12hA | 188.11 | HC |
| SRR7265390 | embryo | 12hA | 173.39 | HC |
| SRR7265391 | embryo | 12hN | 121.57 | HC |
| SRR7265392 | embryo | 12hN | 112.47 | HC |
| SRR7265393 | embryo | 12hN | 127.86 | HC |
| SRR7265394 | embryo | 24hA | 143.72 | HC |
| SRR7265395 | embryo | 24hA | 148.99 | HC |
| SRR7265396 | embryo | 24hA | 144.95 | HC |
| SRR7265397 | embryo | 24hN | 137.04 | HC |
| SRR7265398 | embryo | 24hN | 106.02 | HC |
| SRR7265399 | embryo | 24hN | 110.57 | HC |
| SRR2338869 | endosprem | high_temperature | 6.83 | HC |
| SRR1213690 | flower | wt(flower buds) | 17.99 | HC |
| SRR1213691 | flower | wt | 36.82 | HC |
| SRR8060837 | leaf | wild_type | 3.75 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 10.57 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.62 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 10.45 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 7.97 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.93 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.91 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.93 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.18 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.69 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.14 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 11.32 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.38 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 5.21 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.49 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.56 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.97 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.21 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 9.92 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.79 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.84 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 11.39 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.13 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.82 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 5.65 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.73 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 11.35 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 14.90 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 6.16 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 7.27 | HC |
| SRR6502088 | leaf | control | 6.49 | HC |
| SRR6502089 | leaf | control | 5.17 | HC |
| SRR6502090 | leaf | control | 4.67 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 6.70 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 5.96 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 8.75 | HC |
| SRR6502101 | leaf | control | 5.06 | HC |
| SRR6168973 | leaf | none (control) | 7.30 | HC |
| SRR6168974 | leaf | none (control) | 10.97 | HC |
| SRR6168975 | leaf | none (control) | 7.26 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 10.28 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 20.02 | HC |
| SRR6168979 | leaf | none (control) | 2.37 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.82 | HC |
| SRR8582892 | panicle | PM | 9.97 | HC |
| SRR8582893 | panicle | PM | 4.89 | HC |
| SRR4947496 | root | control | 124.99 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 12.19 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 24.76 | HC |
| SRR1633182 | panicle | WT | 6.00 | HC |
| SRR1633185 | panicle | WT | 6.30 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 12.04 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 10.54 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 11.83 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 15.78 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 16.67 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 12.13 | HC |
| SRR5126147 | root | "mock,1_day" | 59.66 | HC |
| SRR5126148 | root | "mock,1_day" | 51.91 | HC |
| SRR5126149 | root | "mock,1_day" | 33.59 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 36.07 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 43.44 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 62.16 | HC |
| SRR5126153 | root | "mock,7_days" | 40.70 | HC |
| SRR5126155 | root | "mock,7_days" | 40.32 | HC |
| SRR5126157 | root | "mock,7_days" | 22.49 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 35.44 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 56.56 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 44.32 | HC |
| SRR5126165 | root | "mock,14_days" | 51.98 | HC |
| SRR5126167 | root | "mock,14_days" | 51.69 | HC |
| SRR5126169 | root | "mock,14_days" | 56.30 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 19.92 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 64.58 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 48.55 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 23.39 | HC |
| SRR1213694 | root | wt | 21.22 | HC |
| SRR4947480 | root | control | 215.98 | HC |
| SRR4947481 | root | control | 227.25 | HC |
| SRR4947484 | root | Al | 201.14 | HC |
| SRR4947485 | root | Al | 159.00 | HC |
| SRR4947488 | root | control | 169.15 | HC |
| SRR4947489 | root | control | 138.32 | HC |
| SRR4947492 | root | Al | 170.99 | HC |
| SRR4947493 | root | Al | 164.71 | HC |
| SRR4947497 | root | control | 175.13 | HC |
| SRR4947500 | root | Al | 150.11 | HC |
| SRR4947501 | root | Al | 196.75 | HC |
| SRR4947504 | root | control | 201.71 | HC |
| SRR4947505 | root | control | 192.00 | HC |
| SRR4947508 | root | Al | 142.03 | HC |
| SRR4947509 | root | Al | 198.68 | HC |
| SRR6502091 | root | 100 mM NaCl | 28.35 | HC |
| SRR6502092 | root | 100 mM NaCl | 26.82 | HC |
| SRR6502093 | root | 100 mM NaCl | 28.49 | HC |
| SRR6502094 | root | control | 24.66 | HC |
| SRR6502095 | root | control | 28.29 | HC |
| SRR6502096 | root | control | 24.12 | HC |
| SRR6502103 | root | 100 mM NaCl | 43.05 | HC |
| SRR6502104 | root | 100 mM NaCl | 41.59 | HC |
| SRR6502105 | root | 100 mM NaCl | 44.00 | HC |
| SRR6502106 | root | control | 32.84 | HC |
| SRR6502107 | root | control | 31.74 | HC |
| SRR6502108 | root | control | 40.12 | HC |
| SRR1740434 | root_differentiation_zone | wt | 48.03 | HC |
| SRR1740435 | root_differentiation_zone | wt | 49.10 | HC |
| SRR1740436 | root_differentiation_zone | wt | 93.93 | HC |
| SRR1740431 | root_elongation_zone | wt | 56.26 | HC |
| SRR1740432 | root_elongation_zone | wt | 139.83 | HC |
| SRR1740433 | root_elongation_zone | wt | 91.43 | HC |
| SRR1740428 | root_meristematic_zone | wt | 59.73 | HC |
| SRR1740429 | root_meristematic_zone | wt | 89.82 | HC |
| SRR1740430 | root_meristematic_zone | wt | 112.48 | HC |
| SRR6441554 | seedling | wild_type | 5.18 | HC |
| SRR2154086 | seedling | wt | 16.52 | HC |
| SRR2154085 | seedling | wt | 18.92 | HC |
| SRR2154087 | seedling | wt | 17.26 | HC |
| SRR2857719 | seedling | drought_stress_0h | 20.62 | HC |
| SRR2857720 | seedling | drought_stress_1h | 14.20 | HC |
| SRR2857721 | seedling | drought_stress_6h | 5.07 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.08 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 21.63 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 26.78 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 10.23 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 24.14 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 10.99 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 14.88 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 38.35 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 25.60 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 28.53 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 35.59 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 21.48 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 30.63 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 12.97 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 28.81 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 14.82 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 16.18 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 20.46 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 18.02 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 18.53 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 15.04 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 14.72 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 9.28 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 11.55 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 10.45 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 11.21 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 9.66 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 11.29 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 11.34 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 11.19 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 9.41 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 11.11 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 11.08 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 12.86 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 8.05 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 10.85 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 12.33 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 6.36 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 51.75 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 43.77 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 35.67 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 21.39 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 46.33 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 43.47 | HC |