| SRR4457250 | 2nd_leaf | DAH4 | 5.02 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 3.75 | HC |
| SRR358795 | callus | wt | 10.87 | HC |
| SRR358796 | callus | wt | 11.27 | HC |
| SRR358797 | callus | wt | 12.64 | HC |
| SRR358798 | callus | wt | 12.64 | HC |
| SRR6320473 | carpel | wt | 11.93 | HC |
| SRR6320498 | carpel | wt | 9.58 | HC |
| SRR5560727 | caryopsis | wild_type | 6.34 | HC |
| SRR5560728 | caryopsis | wild_type | 6.73 | HC |
| SRR5560729 | caryopsis | wild_type | 8.00 | HC |
| SRR7265400 | coleoptile | 2dA | 5.68 | HC |
| SRR7265401 | coleoptile | 2dA | 6.26 | HC |
| SRR7265402 | coleoptile | 2dA | 5.73 | HC |
| SRR7265403 | coleoptile | 2dN | 10.60 | HC |
| SRR7265404 | coleoptile | 2dN | 9.98 | HC |
| SRR7265405 | coleoptile | 2dN | 9.04 | HC |
| SRR7265406 | coleoptile | 3dA | 4.58 | HC |
| SRR7265407 | coleoptile | 3dA | 4.93 | HC |
| SRR7265408 | coleoptile | 3dA | 3.89 | HC |
| SRR7265409 | coleoptile | 3dN | 11.95 | HC |
| SRR7265410 | coleoptile | 3dN | 9.04 | HC |
| SRR7265411 | coleoptile | 3dN | 9.27 | HC |
| SRR7265412 | coleoptile | 4dA | 4.21 | HC |
| SRR7265413 | coleoptile | 4dA | 9.04 | HC |
| SRR7265414 | coleoptile | 4dA | 6.67 | HC |
| SRR7265415 | coleoptile | 4dN | 11.79 | HC |
| SRR7265416 | coleoptile | 4dN | 9.66 | HC |
| SRR7265417 | coleoptile | 4dN | 9.48 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 5.50 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 5.73 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 4.82 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 5.30 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 5.84 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 7.69 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 7.38 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 10.77 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 6.87 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 7.62 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 5.68 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 9.47 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 9.62 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 7.88 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 7.88 | HC |
| SRR7265373 | embryo | dry seed 0 h | 11.38 | HC |
| SRR7265374 | embryo | dry seed 0 h | 12.55 | HC |
| SRR7265375 | embryo | dry seed 0 h | 3.48 | HC |
| SRR7265376 | embryo | 1hA | 7.10 | HC |
| SRR7265377 | embryo | 1hA | 6.49 | HC |
| SRR7265378 | embryo | 1hA | 7.06 | HC |
| SRR7265379 | embryo | 1hN | 8.25 | HC |
| SRR7265380 | embryo | 1hN | 7.81 | HC |
| SRR7265381 | embryo | 1hN | 8.64 | HC |
| SRR7265382 | embryo | 3hA | 11.86 | HC |
| SRR7265383 | embryo | 3hA | 9.92 | HC |
| SRR7265384 | embryo | 3hA | 11.17 | HC |
| SRR7265385 | embryo | 3hN | 7.63 | HC |
| SRR7265386 | embryo | 3hN | 7.45 | HC |
| SRR7265387 | embryo | 3hN | 6.77 | HC |
| SRR7265388 | embryo | 12hA | 9.23 | HC |
| SRR7265389 | embryo | 12hA | 9.68 | HC |
| SRR7265390 | embryo | 12hA | 9.40 | HC |
| SRR7265391 | embryo | 12hN | 14.59 | HC |
| SRR7265392 | embryo | 12hN | 12.89 | HC |
| SRR7265393 | embryo | 12hN | 12.03 | HC |
| SRR7265394 | embryo | 24hA | 7.53 | HC |
| SRR7265395 | embryo | 24hA | 9.50 | HC |
| SRR7265396 | embryo | 24hA | 7.79 | HC |
| SRR7265397 | embryo | 24hN | 12.07 | HC |
| SRR7265398 | embryo | 24hN | 11.03 | HC |
| SRR7265399 | embryo | 24hN | 10.46 | HC |
| SRR2338867 | endosprem | control | 2.59 | HC |
| SRR2338868 | endosprem | high_temperature | 3.33 | HC |
| SRR4457232 | flag_leaf | DAH4 | 4.06 | HC |
| SRR4457233 | flag_leaf | DAH4 | 4.71 | HC |
| SRR4457243 | flag_leaf | DAH36 | 4.44 | HC |
| SRR4457245 | flag_leaf | DAH36 | 4.52 | HC |
| SRR1213690 | flower | wt(flower buds) | 8.19 | HC |
| SRR1213691 | flower | wt | 9.01 | HC |
| SRR8060835 | leaf | wild_type | 5.79 | HC |
| SRR8060836 | leaf | wild_type | 8.84 | HC |
| SRR8060837 | leaf | wild_type | 5.87 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.40 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 5.05 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.52 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.74 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 10.47 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 11.01 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.52 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.81 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.50 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.84 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 13.28 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 9.59 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 10.03 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 9.35 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 9.36 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.88 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 6.09 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 6.86 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 10.66 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.84 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.88 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 14.53 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.73 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 11.91 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 14.44 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 10.65 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.46 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 16.51 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 13.14 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.74 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 11.65 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 10.17 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.28 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 15.98 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 12.08 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 12.61 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 7.62 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 8.70 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 7.62 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 8.70 | HC |
| SRR1761530 | leaf | control | 7.62 | HC |
| SRR1761531 | leaf | control | 8.70 | HC |
| SRR504365 | leaf | wt | 10.04 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 4.23 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 4.76 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 4.98 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.40 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 6.76 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 6.11 | HC |
| SRR1213692 | leaf | wt | 5.95 | HC |
| SRR1213693 | leaf | wt | 4.71 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 7.20 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 6.19 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 9.94 | HC |
| SRR6502088 | leaf | control | 7.00 | HC |
| SRR6502089 | leaf | control | 5.15 | HC |
| SRR6502090 | leaf | control | 5.04 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 8.72 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 9.83 | HC |
| SRR6502100 | leaf | control | 5.33 | HC |
| SRR6502101 | leaf | control | 5.71 | HC |
| SRR6502102 | leaf | control | 5.42 | HC |
| SRR5856929 | leaf | control | 2.52 | HC |
| SRR5856933 | leaf | control | 3.23 | HC |
| SRR5856934 | leaf | control | 2.85 | HC |
| SRR5856935 | leaf | control | 2.88 | HC |
| SRR8582888 | panicle | AM | 3.35 | HC |
| SRR8582890 | panicle | AM | 4.15 | HC |
| SRR8582891 | panicle | PM | 15.35 | HC |
| SRR8582892 | panicle | PM | 25.04 | HC |
| SRR8582893 | panicle | PM | 12.31 | HC |
| SRR5110429 | panicle | Dawn | 7.66 | HC |
| SRR5110431 | panicle | Dawn | 5.37 | HC |
| SRR5110432 | panicle | Dawn | 4.99 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.36 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 4.98 | HC |
| SRR5110437 | panicle | Dawn + 7h | 4.31 | HC |
| SRR5110438 | panicle | Dawn + 7h | 4.83 | HC |
| SRR5110440 | panicle | Dawn + 7h | 6.40 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 5.23 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 4.55 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 7.12 | HC |
| SRR5110445 | panicle | Dusk | 5.30 | HC |
| SRR5110446 | panicle | Dusk | 5.24 | HC |
| SRR5110448 | panicle | Dusk | 6.10 | HC |
| SRR5110450 | panicle | Dawn + 14h | 5.87 | HC |
| SRR5110451 | panicle | Dawn + 14h | 4.54 | HC |
| SRR5110452 | panicle | Dawn + 14h | 6.65 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 5.34 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 4.63 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 6.32 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 7.78 | HC |
| SRR5110457 | panicle | Dawn + 21h | 6.62 | HC |
| SRR5110458 | panicle | Dawn + 21h | 4.19 | HC |
| SRR5110459 | panicle | Dawn + 21h | 5.92 | HC |
| SRR5110460 | panicle | Dawn + 21h | 8.41 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.69 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 3.61 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 3.94 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.22 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 8.38 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 18.39 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 16.29 | HC |
| SRR5126147 | root | "mock,1_day" | 4.61 | HC |
| SRR5126149 | root | "mock,1_day" | 6.05 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 9.30 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 9.47 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 4.66 | HC |
| SRR5126153 | root | "mock,7_days" | 5.18 | HC |
| SRR5126155 | root | "mock,7_days" | 5.75 | HC |
| SRR5126157 | root | "mock,7_days" | 9.56 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 8.24 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 11.92 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 11.50 | HC |
| SRR5126165 | root | "mock,14_days" | 5.91 | HC |
| SRR5126167 | root | "mock,14_days" | 4.64 | HC |
| SRR5126169 | root | "mock,14_days" | 5.41 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 8.01 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 9.15 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 7.70 | HC |
| SRR1213695 | root | wt | 7.25 | HC |
| SRR4947503 | root | control | 5.17 | HC |
| SRR6502091 | root | 100 mM NaCl | 8.60 | HC |
| SRR6502092 | root | 100 mM NaCl | 7.55 | HC |
| SRR6502093 | root | 100 mM NaCl | 9.63 | HC |
| SRR6502095 | root | control | 5.28 | HC |
| SRR6502103 | root | 100 mM NaCl | 5.54 | HC |
| SRR6502104 | root | 100 mM NaCl | 6.04 | HC |
| SRR6502107 | root | control | 4.04 | HC |
| SRR6502108 | root | control | 5.77 | HC |
| SRR6441554 | seedling | wild_type | 4.50 | HC |
| SRR6441555 | seedling | wild_type | 3.81 | HC |
| SRR2154086 | seedling | wt | 6.54 | HC |
| SRR2154082 | seedling | wt | 6.32 | HC |
| SRR2154083 | seedling | wt | 9.17 | HC |
| SRR2154084 | seedling | wt | 6.19 | HC |
| SRR2154085 | seedling | wt | 6.60 | HC |
| SRR2154087 | seedling | wt | 6.96 | HC |
| SRR3098741 | seedling | wt | 4.60 | HC |
| SRR3098742 | seedling | wt | 4.04 | HC |
| SRR3098743 | seedling | wt | 4.65 | HC |
| SRR2857719 | seedling | drought_stress_0h | 7.65 | HC |
| SRR2857720 | seedling | drought_stress_1h | 5.45 | HC |
| SRR2857721 | seedling | drought_stress_6h | 4.99 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.81 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 4.24 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 6.54 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 6.47 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.78 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.90 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.49 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 9.13 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.72 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.97 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.47 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.86 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.01 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.28 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 9.29 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 7.69 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 11.11 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 9.47 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 8.87 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 8.99 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 10.97 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 9.43 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 8.08 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 7.22 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 5.35 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.79 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 10.38 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 7.97 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 10.55 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 6.98 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 8.63 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 6.38 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 7.47 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 6.44 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 12.78 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 11.57 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 7.24 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 6.07 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 6.17 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 5.46 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 7.13 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 3.72 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 7.75 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 5.69 | HC |