| SRR358795 | callus | wt | 10.12 | HC |
| SRR358798 | callus | wt | 9.34 | HC |
| SRR5560727 | caryopsis | wild_type | 7.11 | HC |
| SRR5560728 | caryopsis | wild_type | 15.09 | HC |
| SRR5560729 | caryopsis | wild_type | 19.67 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 17.93 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 19.80 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 8.14 | HC |
| SRR4947495 | root | control | 9.52 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 16.87 | HC |
| SRR7265400 | coleoptile | 2dA | 13.18 | HC |
| SRR7265401 | coleoptile | 2dA | 14.17 | HC |
| SRR7265402 | coleoptile | 2dA | 14.73 | HC |
| SRR7265403 | coleoptile | 2dN | 17.93 | HC |
| SRR7265404 | coleoptile | 2dN | 19.27 | HC |
| SRR7265405 | coleoptile | 2dN | 17.26 | HC |
| SRR7265406 | coleoptile | 3dA | 13.20 | HC |
| SRR7265407 | coleoptile | 3dA | 13.23 | HC |
| SRR7265408 | coleoptile | 3dA | 9.15 | HC |
| SRR7265409 | coleoptile | 3dN | 14.28 | HC |
| SRR7265410 | coleoptile | 3dN | 15.61 | HC |
| SRR7265411 | coleoptile | 3dN | 14.22 | HC |
| SRR7265412 | coleoptile | 4dA | 6.71 | HC |
| SRR7265413 | coleoptile | 4dA | 9.47 | HC |
| SRR7265414 | coleoptile | 4dA | 6.98 | HC |
| SRR7265415 | coleoptile | 4dN | 13.40 | HC |
| SRR7265416 | coleoptile | 4dN | 15.06 | HC |
| SRR7265417 | coleoptile | 4dN | 15.79 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 11.09 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 12.73 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 11.22 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 15.65 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 17.22 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 8.55 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 8.44 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 19.74 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 7.41 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 15.00 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 12.69 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 10.97 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 9.71 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 17.18 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 9.22 | HC |
| SRR7265373 | embryo | dry seed 0 h | 5.15 | HC |
| SRR7265374 | embryo | dry seed 0 h | 6.57 | HC |
| SRR7265376 | embryo | 1hA | 6.44 | HC |
| SRR7265377 | embryo | 1hA | 7.81 | HC |
| SRR7265378 | embryo | 1hA | 6.27 | HC |
| SRR7265379 | embryo | 1hN | 6.12 | HC |
| SRR7265380 | embryo | 1hN | 5.67 | HC |
| SRR7265381 | embryo | 1hN | 5.86 | HC |
| SRR7265382 | embryo | 3hA | 6.50 | HC |
| SRR7265383 | embryo | 3hA | 5.20 | HC |
| SRR7265384 | embryo | 3hA | 6.28 | HC |
| SRR7265385 | embryo | 3hN | 5.66 | HC |
| SRR7265386 | embryo | 3hN | 6.43 | HC |
| SRR7265387 | embryo | 3hN | 5.94 | HC |
| SRR7265388 | embryo | 12hA | 19.12 | HC |
| SRR7265389 | embryo | 12hA | 22.47 | HC |
| SRR7265390 | embryo | 12hA | 22.89 | HC |
| SRR7265391 | embryo | 12hN | 21.79 | HC |
| SRR7265392 | embryo | 12hN | 21.30 | HC |
| SRR7265393 | embryo | 12hN | 21.13 | HC |
| SRR7265394 | embryo | 24hA | 21.47 | HC |
| SRR7265395 | embryo | 24hA | 18.99 | HC |
| SRR7265396 | embryo | 24hA | 23.18 | HC |
| SRR7265397 | embryo | 24hN | 20.25 | HC |
| SRR7265398 | embryo | 24hN | 21.69 | HC |
| SRR7265399 | embryo | 24hN | 23.41 | HC |
| SRR2338866 | endosprem | control | 5.66 | HC |
| SRR2338867 | endosprem | control | 2.52 | HC |
| SRR2338868 | endosprem | high_temperature | 4.31 | HC |
| SRR2338869 | endosprem | high_temperature | 8.16 | HC |
| SRR1213690 | flower | wt(flower buds) | 7.03 | HC |
| SRR1213691 | flower | wt | 8.14 | HC |
| SRR8060836 | leaf | wild_type | 4.86 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 10.01 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 8.92 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 9.10 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 8.47 | HC |
| SRR8611900 | leaf | Non-inoculated | 9.14 | HC |
| SRR8611901 | leaf | Non-inoculated | 7.23 | HC |
| SRR8611902 | leaf | Non-inoculated | 8.14 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 11.08 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 13.25 | HC |
| SRR1213692 | leaf | wt | 5.25 | HC |
| SRR1213693 | leaf | wt | 6.09 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 5.04 | HC |
| SRR5856927 | leaf | control | 4.13 | HC |
| SRR5856928 | leaf | control | 4.48 | HC |
| SRR5856929 | leaf | control | 5.82 | HC |
| SRR5856930 | leaf | salt | 2.57 | HC |
| SRR5856931 | leaf | salt | 3.32 | HC |
| SRR5856932 | leaf | salt | 3.15 | HC |
| SRR5856933 | leaf | control | 4.69 | HC |
| SRR5856934 | leaf | control | 3.65 | HC |
| SRR5856935 | leaf | control | 4.15 | HC |
| SRR5856936 | leaf | salt | 3.40 | HC |
| SRR5856937 | leaf | salt | 3.15 | HC |
| SRR5856938 | leaf | salt | 2.58 | HC |
| SRR6168973 | leaf | none (control) | 15.25 | HC |
| SRR6168974 | leaf | none (control) | 11.86 | HC |
| SRR6168975 | leaf | none (control) | 8.07 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 33.05 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 25.17 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 3.17 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 3.30 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 5.94 | HC |
| SRR4947496 | root | control | 23.46 | HC |
| SRR5110447 | panicle | Dusk | 4.60 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 4.09 | HC |
| SRR1633182 | panicle | WT | 5.64 | HC |
| SRR1633185 | panicle | WT | 7.44 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.36 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 4.85 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.65 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 8.97 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 25.65 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 29.37 | HC |
| SRR5126147 | root | "mock,1_day" | 13.78 | HC |
| SRR5126148 | root | "mock,1_day" | 12.51 | HC |
| SRR5126149 | root | "mock,1_day" | 9.60 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 8.89 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 8.42 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 8.76 | HC |
| SRR5126153 | root | "mock,7_days" | 6.57 | HC |
| SRR5126155 | root | "mock,7_days" | 5.77 | HC |
| SRR5126157 | root | "mock,7_days" | 5.69 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 8.00 | HC |
| SRR5126169 | root | "mock,14_days" | 6.80 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 7.99 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 3.86 | HC |
| SRR1213695 | root | wt | 5.71 | HC |
| SRR4947478 | root | control | 8.97 | HC |
| SRR4947479 | root | control | 10.88 | HC |
| SRR4947480 | root | control | 21.08 | HC |
| SRR4947481 | root | control | 24.68 | HC |
| SRR4947483 | root | Al | 8.11 | HC |
| SRR4947484 | root | Al | 21.88 | HC |
| SRR4947485 | root | Al | 20.62 | HC |
| SRR4947487 | root | control | 8.22 | HC |
| SRR4947488 | root | control | 23.37 | HC |
| SRR4947489 | root | control | 24.85 | HC |
| SRR4947490 | root | Al | 9.42 | HC |
| SRR4947491 | root | Al | 9.05 | HC |
| SRR4947492 | root | Al | 20.41 | HC |
| SRR4947493 | root | Al | 20.89 | HC |
| SRR4947494 | root | control | 10.43 | HC |
| SRR4947497 | root | control | 17.57 | HC |
| SRR4947498 | root | Al | 9.52 | HC |
| SRR4947499 | root | Al | 9.43 | HC |
| SRR4947500 | root | Al | 19.62 | HC |
| SRR4947501 | root | Al | 18.74 | HC |
| SRR4947502 | root | control | 9.07 | HC |
| SRR4947503 | root | control | 8.71 | HC |
| SRR4947504 | root | control | 20.88 | HC |
| SRR4947505 | root | control | 20.04 | HC |
| SRR4947506 | root | Al | 8.71 | HC |
| SRR4947507 | root | Al | 6.05 | HC |
| SRR4947508 | root | Al | 17.59 | HC |
| SRR4947509 | root | Al | 13.66 | HC |
| SRR6502091 | root | 100 mM NaCl | 9.69 | HC |
| SRR6502092 | root | 100 mM NaCl | 13.80 | HC |
| SRR6502093 | root | 100 mM NaCl | 13.35 | HC |
| SRR6502094 | root | control | 12.43 | HC |
| SRR6502095 | root | control | 12.85 | HC |
| SRR6502096 | root | control | 12.66 | HC |
| SRR6502103 | root | 100 mM NaCl | 15.53 | HC |
| SRR6502104 | root | 100 mM NaCl | 15.60 | HC |
| SRR6502105 | root | 100 mM NaCl | 16.45 | HC |
| SRR6502106 | root | control | 11.76 | HC |
| SRR6502107 | root | control | 12.61 | HC |
| SRR6502108 | root | control | 11.54 | HC |
| SRR1740434 | root_differentiation_zone | wt | 7.49 | HC |
| SRR1740435 | root_differentiation_zone | wt | 14.57 | HC |
| SRR1740436 | root_differentiation_zone | wt | 14.01 | HC |
| SRR1740431 | root_elongation_zone | wt | 13.92 | HC |
| SRR1740432 | root_elongation_zone | wt | 14.39 | HC |
| SRR1740433 | root_elongation_zone | wt | 15.35 | HC |
| SRR1740428 | root_meristematic_zone | wt | 10.64 | HC |
| SRR1740429 | root_meristematic_zone | wt | 6.58 | HC |
| SRR1740430 | root_meristematic_zone | wt | 7.57 | HC |
| SRR6441554 | seedling | wild_type | 9.67 | HC |
| SRR6441555 | seedling | wild_type | 7.83 | HC |
| SRR2154086 | seedling | wt | 7.44 | HC |
| SRR2154082 | seedling | wt | 6.17 | HC |
| SRR2154084 | seedling | wt | 7.76 | HC |
| SRR2154085 | seedling | wt | 7.11 | HC |
| SRR2154087 | seedling | wt | 7.01 | HC |
| SRR2857719 | seedling | drought_stress_0h | 6.87 | HC |
| SRR2857720 | seedling | drought_stress_1h | 4.97 | HC |
| SRR2857721 | seedling | drought_stress_6h | 4.19 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 5.43 | HC |
| SRR1944583 | seedling | no_treatment | 4.96 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.77 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 7.43 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 7.42 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 14.72 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 13.31 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 10.00 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.72 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 10.46 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 3.33 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 4.31 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 5.37 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 5.48 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.99 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.29 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.18 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.39 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.98 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.15 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 3.87 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.56 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.15 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 5.23 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 4.16 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.23 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.70 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 20.93 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 23.38 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 21.51 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 20.72 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 26.77 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 19.21 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 15.55 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 18.71 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 18.81 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 16.20 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 20.20 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 18.80 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 19.27 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 19.43 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 26.08 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 18.76 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 21.90 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 24.85 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 19.84 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 22.22 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 16.75 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 18.73 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 17.06 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 11.60 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 9.21 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 11.05 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 14.73 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 12.60 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 16.72 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 16.63 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 12.98 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 11.52 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 13.95 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 15.46 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 18.76 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 16.81 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 19.29 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 10.26 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 15.82 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 12.93 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.52 | HC |