| SRR358795 | callus | wt | 24.17 | HC |
| SRR358796 | callus | wt | 22.31 | HC |
| SRR358797 | callus | wt | 29.46 | HC |
| SRR358798 | callus | wt | 25.94 | HC |
| SRR6320473 | carpel | wt | 8.51 | HC |
| SRR6320498 | carpel | wt | 10.62 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 13.25 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 14.23 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 12.64 | HC |
| SRR4947495 | root | control | 13.31 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 9.94 | HC |
| SRR7265400 | coleoptile | 2dA | 6.87 | HC |
| SRR7265401 | coleoptile | 2dA | 7.25 | HC |
| SRR7265402 | coleoptile | 2dA | 5.95 | HC |
| SRR7265406 | coleoptile | 3dA | 4.86 | HC |
| SRR7265407 | coleoptile | 3dA | 4.48 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 9.29 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 14.21 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 4.09 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 4.24 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 10.03 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 11.03 | HC |
| SRR7265388 | embryo | 12hA | 7.01 | HC |
| SRR7265389 | embryo | 12hA | 5.47 | HC |
| SRR7265390 | embryo | 12hA | 7.29 | HC |
| SRR7265394 | embryo | 24hA | 8.50 | HC |
| SRR7265395 | embryo | 24hA | 10.07 | HC |
| SRR7265396 | embryo | 24hA | 7.46 | HC |
| SRR1213690 | flower | wt(flower buds) | 9.86 | HC |
| SRR1213691 | flower | wt | 26.72 | HC |
| SRR8060835 | leaf | wild_type | 3.78 | HC |
| SRR8060836 | leaf | wild_type | 6.50 | HC |
| SRR8060837 | leaf | wild_type | 3.41 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 11.45 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 6.43 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 13.53 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 15.43 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 19.72 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 16.94 | HC |
| SRR1213692 | leaf | wt | 20.02 | HC |
| SRR1213693 | leaf | wt | 21.10 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 8.60 | HC |
| SRR5110429 | panicle | Dawn | 9.64 | HC |
| SRR5110430 | panicle | Dawn | 7.19 | HC |
| SRR5110431 | panicle | Dawn | 6.25 | HC |
| SRR5110432 | panicle | Dawn | 5.56 | HC |
| SRR4947496 | root | control | 6.52 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 5.58 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 4.18 | HC |
| SRR5110437 | panicle | Dawn + 7h | 6.24 | HC |
| SRR5110438 | panicle | Dawn + 7h | 7.07 | HC |
| SRR5110440 | panicle | Dawn + 7h | 8.16 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 6.29 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 4.99 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 7.45 | HC |
| SRR5110446 | panicle | Dusk | 9.32 | HC |
| SRR5110447 | panicle | Dusk | 10.26 | HC |
| SRR5110448 | panicle | Dusk | 10.88 | HC |
| SRR5110450 | panicle | Dawn + 14h | 4.93 | HC |
| SRR5110451 | panicle | Dawn + 14h | 6.04 | HC |
| SRR5110452 | panicle | Dawn + 14h | 9.75 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.42 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.86 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.85 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 7.76 | HC |
| SRR5110458 | panicle | Dawn + 21h | 3.95 | HC |
| SRR5110459 | panicle | Dawn + 21h | 6.82 | HC |
| SRR5110460 | panicle | Dawn + 21h | 5.13 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.04 | HC |
| SRR1633182 | panicle | WT | 18.39 | HC |
| SRR1633185 | panicle | WT | 25.40 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 57.19 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 54.26 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 32.07 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 33.84 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 16.42 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 16.96 | HC |
| SRR5126147 | root | "mock,1_day" | 25.41 | HC |
| SRR5126148 | root | "mock,1_day" | 29.44 | HC |
| SRR5126149 | root | "mock,1_day" | 15.60 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 21.65 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 21.20 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 37.52 | HC |
| SRR5126153 | root | "mock,7_days" | 29.60 | HC |
| SRR5126155 | root | "mock,7_days" | 19.67 | HC |
| SRR5126157 | root | "mock,7_days" | 12.53 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 25.37 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 24.35 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 30.93 | HC |
| SRR5126165 | root | "mock,14_days" | 25.09 | HC |
| SRR5126167 | root | "mock,14_days" | 12.26 | HC |
| SRR5126169 | root | "mock,14_days" | 21.31 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 22.65 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 27.47 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 18.35 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 9.29 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 6.92 | HC |
| SRR1213694 | root | wt | 10.21 | HC |
| SRR1213695 | root | wt | 14.05 | HC |
| SRR4947478 | root | control | 10.62 | HC |
| SRR4947479 | root | control | 15.92 | HC |
| SRR4947480 | root | control | 11.42 | HC |
| SRR4947481 | root | control | 12.88 | HC |
| SRR4947482 | root | Al | 10.23 | HC |
| SRR4947483 | root | Al | 9.89 | HC |
| SRR4947484 | root | Al | 11.47 | HC |
| SRR4947485 | root | Al | 10.90 | HC |
| SRR4947487 | root | control | 11.26 | HC |
| SRR4947488 | root | control | 10.55 | HC |
| SRR4947489 | root | control | 13.77 | HC |
| SRR4947490 | root | Al | 10.53 | HC |
| SRR4947491 | root | Al | 18.57 | HC |
| SRR4947492 | root | Al | 10.61 | HC |
| SRR4947493 | root | Al | 10.19 | HC |
| SRR4947494 | root | control | 12.93 | HC |
| SRR4947497 | root | control | 16.78 | HC |
| SRR4947498 | root | Al | 18.41 | HC |
| SRR4947499 | root | Al | 14.60 | HC |
| SRR4947500 | root | Al | 16.06 | HC |
| SRR4947501 | root | Al | 15.81 | HC |
| SRR4947502 | root | control | 17.55 | HC |
| SRR4947503 | root | control | 18.48 | HC |
| SRR4947504 | root | control | 13.94 | HC |
| SRR4947505 | root | control | 16.09 | HC |
| SRR4947506 | root | Al | 8.90 | HC |
| SRR4947507 | root | Al | 21.25 | HC |
| SRR4947508 | root | Al | 10.72 | HC |
| SRR4947509 | root | Al | 12.11 | HC |
| SRR6502091 | root | 100 mM NaCl | 20.33 | HC |
| SRR6502092 | root | 100 mM NaCl | 18.90 | HC |
| SRR6502093 | root | 100 mM NaCl | 20.85 | HC |
| SRR6502094 | root | control | 21.13 | HC |
| SRR6502095 | root | control | 24.16 | HC |
| SRR6502096 | root | control | 22.37 | HC |
| SRR6502103 | root | 100 mM NaCl | 11.39 | HC |
| SRR6502104 | root | 100 mM NaCl | 12.09 | HC |
| SRR6502105 | root | 100 mM NaCl | 11.95 | HC |
| SRR6502106 | root | control | 12.14 | HC |
| SRR6502107 | root | control | 14.93 | HC |
| SRR6502108 | root | control | 22.90 | HC |
| SRR1740434 | root_differentiation_zone | wt | 12.68 | HC |
| SRR1740435 | root_differentiation_zone | wt | 18.26 | HC |
| SRR1740436 | root_differentiation_zone | wt | 13.08 | HC |
| SRR1740431 | root_elongation_zone | wt | 22.27 | HC |
| SRR1740432 | root_elongation_zone | wt | 34.47 | HC |
| SRR1740433 | root_elongation_zone | wt | 32.06 | HC |
| SRR1740428 | root_meristematic_zone | wt | 38.55 | HC |
| SRR1740429 | root_meristematic_zone | wt | 49.90 | HC |
| SRR1740430 | root_meristematic_zone | wt | 48.75 | HC |
| SRR2154086 | seedling | wt | 20.60 | HC |
| SRR2154082 | seedling | wt | 4.75 | HC |
| SRR2154083 | seedling | wt | 7.76 | HC |
| SRR2154084 | seedling | wt | 7.65 | HC |
| SRR2154087 | seedling | wt | 14.82 | HC |
| SRR2857719 | seedling | drought_stress_0h | 9.39 | HC |
| SRR2857720 | seedling | drought_stress_1h | 4.27 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 5.10 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.16 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 50.14 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 65.71 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 58.86 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 61.66 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 41.82 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 57.90 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 58.83 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 67.14 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 71.19 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 74.43 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 69.97 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 67.39 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 79.41 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 69.28 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 62.57 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 74.11 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 64.38 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 74.07 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 73.83 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 72.20 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 86.02 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 69.82 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 61.16 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 22.58 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 26.70 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 18.62 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 25.73 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 22.53 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 27.02 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 66.46 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 63.39 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 60.83 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 58.37 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 64.51 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 61.39 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 42.36 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 42.24 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 45.50 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 9.41 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 5.62 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 5.81 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 5.46 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 4.77 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 5.77 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 4.63 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 4.16 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 7.07 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 5.42 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 5.01 | HC |