| SRR358796 | callus | wt | 10.82 | HC |
| SRR5560727 | caryopsis | wild_type | 10.72 | HC |
| SRR5560728 | caryopsis | wild_type | 14.84 | HC |
| SRR5560729 | caryopsis | wild_type | 14.20 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 8.27 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 7.56 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 6.34 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 9.39 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 7.44 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 5.93 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 12.32 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 10.58 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 7.44 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.88 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.69 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.17 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.94 | HC |
| SRR6168973 | leaf | none (control) | 6.87 | HC |
| SRR6168974 | leaf | none (control) | 6.75 | HC |
| SRR6168981 | leaf | none (control) | 6.27 | HC |
| SRR5110438 | panicle | Dawn + 7h | 4.43 | HC |
| SRR5110446 | panicle | Dusk | 5.03 | HC |
| SRR5110447 | panicle | Dusk | 5.96 | HC |
| SRR5110448 | panicle | Dusk | 6.33 | HC |
| SRR5110451 | panicle | Dawn + 14h | 4.05 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.37 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.55 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.09 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.10 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.25 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 7.23 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 10.22 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 8.41 | HC |
| SRR5126147 | root | "mock,1_day" | 6.98 | HC |
| SRR5126148 | root | "mock,1_day" | 7.39 | HC |
| SRR5126149 | root | "mock,1_day" | 8.09 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 9.58 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 8.30 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 6.85 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 7.37 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 10.38 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 6.96 | HC |
| SRR5126165 | root | "mock,14_days" | 5.77 | HC |
| SRR5126169 | root | "mock,14_days" | 6.75 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 9.00 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 9.40 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 12.41 | HC |
| SRR4947491 | root | Al | 5.96 | HC |
| SRR6502091 | root | 100 mM NaCl | 6.00 | HC |
| SRR1740436 | root_differentiation_zone | wt | 3.32 | HC |
| SRR1740432 | root_elongation_zone | wt | 6.60 | HC |
| SRR1740433 | root_elongation_zone | wt | 6.38 | HC |
| SRR1740428 | root_meristematic_zone | wt | 5.21 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.55 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 14.42 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 9.64 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 8.58 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 8.00 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 9.57 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 9.22 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 10.10 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 8.82 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 8.06 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 9.21 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 8.73 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 8.18 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 10.23 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 12.39 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 10.63 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 9.38 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 6.37 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 6.56 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 5.76 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 9.72 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 8.01 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 12.95 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 9.79 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 11.32 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 9.30 | HC |