| SRR5560727 | caryopsis | wild_type | 10.61 | HC |
| SRR5560728 | caryopsis | wild_type | 7.56 | HC |
| SRR5560729 | caryopsis | wild_type | 6.90 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 16.77 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 24.71 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 10.99 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 21.00 | HC |
| SRR7265393 | embryo | 12hN | 6.13 | HC |
| SRR2338868 | endosprem | high_temperature | 2.75 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.76 | HC |
| SRR1213691 | flower | wt | 7.24 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.75 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.81 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.83 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.13 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 4.86 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 4.13 | HC |
| SRR8611900 | leaf | Non-inoculated | 5.83 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.32 | HC |
| SRR8611902 | leaf | Non-inoculated | 4.42 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 9.67 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 9.26 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 9.77 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.49 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 6.71 | HC |
| SRR1213693 | leaf | wt | 7.85 | HC |
| SRR6168973 | leaf | none (control) | 21.56 | HC |
| SRR6168974 | leaf | none (control) | 19.29 | HC |
| SRR6168975 | leaf | none (control) | 14.90 | HC |
| SRR6168980 | leaf | none (control) | 2.23 | HC |
| SRR6168981 | leaf | none (control) | 8.41 | HC |
| SRR8582893 | panicle | PM | 5.22 | HC |
| SRR4947496 | root | control | 9.29 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.83 | HC |
| SRR1633182 | panicle | WT | 7.80 | HC |
| SRR1633185 | panicle | WT | 10.55 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 9.75 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 6.82 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 11.61 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 10.32 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 19.44 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 22.69 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.17 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 5.83 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.66 | HC |
| SRR1213695 | root | wt | 5.04 | HC |
| SRR4947480 | root | control | 8.28 | HC |
| SRR4947481 | root | control | 11.08 | HC |
| SRR4947484 | root | Al | 12.47 | HC |
| SRR4947485 | root | Al | 7.67 | HC |
| SRR4947488 | root | control | 12.54 | HC |
| SRR4947489 | root | control | 11.85 | HC |
| SRR4947492 | root | Al | 10.00 | HC |
| SRR4947493 | root | Al | 9.74 | HC |
| SRR4947497 | root | control | 8.91 | HC |
| SRR4947500 | root | Al | 5.97 | HC |
| SRR4947501 | root | Al | 8.64 | HC |
| SRR4947504 | root | control | 9.88 | HC |
| SRR4947505 | root | control | 10.92 | HC |
| SRR4947508 | root | Al | 9.93 | HC |
| SRR4947509 | root | Al | 7.99 | HC |
| SRR6502091 | root | 100 mM NaCl | 6.92 | HC |
| SRR6502092 | root | 100 mM NaCl | 15.77 | HC |
| SRR6502093 | root | 100 mM NaCl | 11.80 | HC |
| SRR6502094 | root | control | 10.79 | HC |
| SRR6502095 | root | control | 10.00 | HC |
| SRR6502096 | root | control | 10.68 | HC |
| SRR6502103 | root | 100 mM NaCl | 9.85 | HC |
| SRR6502104 | root | 100 mM NaCl | 10.59 | HC |
| SRR6502105 | root | 100 mM NaCl | 10.30 | HC |
| SRR6502106 | root | control | 9.30 | HC |
| SRR6502107 | root | control | 11.28 | HC |
| SRR6502108 | root | control | 8.87 | HC |
| SRR1740435 | root_differentiation_zone | wt | 3.45 | HC |
| SRR1740436 | root_differentiation_zone | wt | 3.46 | HC |
| SRR1740431 | root_elongation_zone | wt | 6.06 | HC |
| SRR1740432 | root_elongation_zone | wt | 4.78 | HC |
| SRR1740433 | root_elongation_zone | wt | 7.47 | HC |
| SRR1740428 | root_meristematic_zone | wt | 7.41 | HC |
| SRR1740429 | root_meristematic_zone | wt | 4.94 | HC |
| SRR1740430 | root_meristematic_zone | wt | 5.99 | HC |
| SRR6441554 | seedling | wild_type | 5.00 | HC |
| SRR6441555 | seedling | wild_type | 5.48 | HC |
| SRR2154086 | seedling | wt | 5.37 | HC |
| SRR2154085 | seedling | wt | 4.72 | HC |
| SRR2154087 | seedling | wt | 6.04 | HC |
| SRR3098741 | seedling | wt | 2.77 | HC |
| SRR3098742 | seedling | wt | 3.95 | HC |
| SRR3098743 | seedling | wt | 3.02 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 7.85 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 8.89 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 8.31 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 13.17 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 14.39 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.95 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.75 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 12.49 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 11.58 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 3.21 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 3.17 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.84 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 3.72 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 4.91 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 4.97 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 4.74 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 4.50 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 5.34 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.37 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.75 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.48 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.42 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 14.65 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 15.07 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 14.02 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 19.56 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 18.16 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 15.40 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 14.43 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 11.57 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 16.51 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 18.68 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 12.64 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 12.22 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 12.06 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 12.18 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 9.63 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 15.62 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 14.48 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 10.97 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 12.71 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 14.15 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 11.45 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 8.72 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 8.42 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 17.08 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 12.08 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 10.61 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 17.00 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 19.10 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 23.01 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 16.38 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 19.72 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 19.83 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 31.24 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 30.38 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 33.12 | HC |