| SRR358796 | callus | wt | 12.43 | HC |
| SRR358797 | callus | wt | 10.13 | HC |
| SRR358798 | callus | wt | 13.16 | HC |
| SRR5560727 | caryopsis | wild_type | 6.99 | HC |
| SRR5560728 | caryopsis | wild_type | 8.19 | HC |
| SRR5560729 | caryopsis | wild_type | 11.28 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 9.50 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 9.11 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 5.84 | HC |
| SRR4947495 | root | control | 11.99 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 7.81 | HC |
| SRR7265400 | coleoptile | 2dA | 7.33 | HC |
| SRR7265401 | coleoptile | 2dA | 7.38 | HC |
| SRR7265402 | coleoptile | 2dA | 7.03 | HC |
| SRR7265403 | coleoptile | 2dN | 7.26 | HC |
| SRR7265404 | coleoptile | 2dN | 6.82 | HC |
| SRR7265405 | coleoptile | 2dN | 7.04 | HC |
| SRR7265406 | coleoptile | 3dA | 3.83 | HC |
| SRR7265409 | coleoptile | 3dN | 4.82 | HC |
| SRR7265410 | coleoptile | 3dN | 3.83 | HC |
| SRR7265411 | coleoptile | 3dN | 4.30 | HC |
| SRR7265416 | coleoptile | 4dN | 5.25 | HC |
| SRR7265417 | coleoptile | 4dN | 4.80 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 9.03 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 15.24 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 5.53 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 7.93 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 12.05 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 7.46 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 7.03 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 9.04 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 11.65 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 12.89 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 13.98 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 14.08 | HC |
| SRR7265388 | embryo | 12hA | 12.54 | HC |
| SRR7265389 | embryo | 12hA | 13.37 | HC |
| SRR7265390 | embryo | 12hA | 13.19 | HC |
| SRR7265391 | embryo | 12hN | 10.90 | HC |
| SRR7265392 | embryo | 12hN | 9.81 | HC |
| SRR7265393 | embryo | 12hN | 8.66 | HC |
| SRR7265394 | embryo | 24hA | 12.15 | HC |
| SRR7265395 | embryo | 24hA | 11.82 | HC |
| SRR7265396 | embryo | 24hA | 11.42 | HC |
| SRR7265397 | embryo | 24hN | 11.19 | HC |
| SRR7265398 | embryo | 24hN | 11.49 | HC |
| SRR7265399 | embryo | 24hN | 9.38 | HC |
| SRR1213690 | flower | wt(flower buds) | 7.17 | HC |
| SRR1213691 | flower | wt | 7.31 | HC |
| SRR8060835 | leaf | wild_type | 6.30 | HC |
| SRR8060836 | leaf | wild_type | 5.33 | HC |
| SRR8060837 | leaf | wild_type | 6.49 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 8.83 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 7.83 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 7.18 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 7.03 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.90 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.31 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.70 | HC |
| SRR8611900 | leaf | Non-inoculated | 7.65 | HC |
| SRR8611901 | leaf | Non-inoculated | 9.02 | HC |
| SRR8611902 | leaf | Non-inoculated | 10.16 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 7.67 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 7.87 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 5.35 | HC |
| SRR5856927 | leaf | control | 3.33 | HC |
| SRR5856928 | leaf | control | 3.32 | HC |
| SRR5856929 | leaf | control | 2.66 | HC |
| SRR5856930 | leaf | salt | 2.43 | HC |
| SRR5856931 | leaf | salt | 2.40 | HC |
| SRR5856932 | leaf | salt | 3.14 | HC |
| SRR5856933 | leaf | control | 3.50 | HC |
| SRR5856934 | leaf | control | 2.83 | HC |
| SRR5856935 | leaf | control | 3.12 | HC |
| SRR5856936 | leaf | salt | 2.58 | HC |
| SRR5856937 | leaf | salt | 2.23 | HC |
| SRR5856938 | leaf | salt | 2.34 | HC |
| SRR6168973 | leaf | none (control) | 4.63 | HC |
| SRR6168974 | leaf | none (control) | 5.94 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 8.55 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 8.15 | HC |
| SRR5110429 | panicle | Dawn | 7.87 | HC |
| SRR5110431 | panicle | Dawn | 5.90 | HC |
| SRR5110432 | panicle | Dawn | 4.97 | HC |
| SRR4947496 | root | control | 8.36 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 5.45 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 5.25 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 4.42 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 5.13 | HC |
| SRR5110437 | panicle | Dawn + 7h | 7.66 | HC |
| SRR5110438 | panicle | Dawn + 7h | 7.87 | HC |
| SRR5110440 | panicle | Dawn + 7h | 7.98 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 6.60 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 7.27 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 6.64 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 7.69 | HC |
| SRR5110445 | panicle | Dusk | 5.04 | HC |
| SRR5110446 | panicle | Dusk | 7.18 | HC |
| SRR5110447 | panicle | Dusk | 11.57 | HC |
| SRR5110448 | panicle | Dusk | 10.64 | HC |
| SRR5110450 | panicle | Dawn + 14h | 6.09 | HC |
| SRR5110451 | panicle | Dawn + 14h | 5.75 | HC |
| SRR5110452 | panicle | Dawn + 14h | 7.94 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 6.44 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 5.11 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 7.62 | HC |
| SRR5110457 | panicle | Dawn + 21h | 5.66 | HC |
| SRR5110459 | panicle | Dawn + 21h | 7.77 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.31 | HC |
| SRR1633182 | panicle | WT | 5.83 | HC |
| SRR1633185 | panicle | WT | 7.56 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 6.49 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.78 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 17.94 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 16.61 | HC |
| SRR5126147 | root | "mock,1_day" | 11.34 | HC |
| SRR5126148 | root | "mock,1_day" | 12.93 | HC |
| SRR5126149 | root | "mock,1_day" | 11.14 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 10.99 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 10.81 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 10.17 | HC |
| SRR5126153 | root | "mock,7_days" | 7.45 | HC |
| SRR5126155 | root | "mock,7_days" | 8.63 | HC |
| SRR5126157 | root | "mock,7_days" | 6.37 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 8.12 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 6.54 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 11.30 | HC |
| SRR5126165 | root | "mock,14_days" | 6.55 | HC |
| SRR5126167 | root | "mock,14_days" | 5.82 | HC |
| SRR5126169 | root | "mock,14_days" | 8.79 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 7.03 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 8.16 | HC |
| SRR1213694 | root | wt | 3.90 | HC |
| SRR4947478 | root | control | 8.09 | HC |
| SRR4947479 | root | control | 7.84 | HC |
| SRR4947480 | root | control | 8.09 | HC |
| SRR4947481 | root | control | 7.00 | HC |
| SRR4947482 | root | Al | 4.12 | HC |
| SRR4947483 | root | Al | 7.86 | HC |
| SRR4947484 | root | Al | 8.79 | HC |
| SRR4947485 | root | Al | 7.96 | HC |
| SRR4947487 | root | control | 10.79 | HC |
| SRR4947488 | root | control | 8.31 | HC |
| SRR4947489 | root | control | 13.05 | HC |
| SRR4947490 | root | Al | 9.08 | HC |
| SRR4947491 | root | Al | 13.09 | HC |
| SRR4947492 | root | Al | 7.65 | HC |
| SRR4947493 | root | Al | 7.88 | HC |
| SRR4947494 | root | control | 6.82 | HC |
| SRR4947497 | root | control | 8.00 | HC |
| SRR4947498 | root | Al | 13.90 | HC |
| SRR4947499 | root | Al | 10.49 | HC |
| SRR4947500 | root | Al | 10.70 | HC |
| SRR4947501 | root | Al | 10.99 | HC |
| SRR4947502 | root | control | 11.81 | HC |
| SRR4947503 | root | control | 11.55 | HC |
| SRR4947504 | root | control | 7.78 | HC |
| SRR4947505 | root | control | 11.12 | HC |
| SRR4947506 | root | Al | 8.27 | HC |
| SRR4947507 | root | Al | 13.53 | HC |
| SRR4947508 | root | Al | 10.17 | HC |
| SRR4947509 | root | Al | 7.87 | HC |
| SRR6502091 | root | 100 mM NaCl | 9.36 | HC |
| SRR6502092 | root | 100 mM NaCl | 10.30 | HC |
| SRR6502093 | root | 100 mM NaCl | 10.12 | HC |
| SRR6502094 | root | control | 10.10 | HC |
| SRR6502095 | root | control | 11.57 | HC |
| SRR6502096 | root | control | 10.83 | HC |
| SRR6502103 | root | 100 mM NaCl | 14.82 | HC |
| SRR6502104 | root | 100 mM NaCl | 13.73 | HC |
| SRR6502105 | root | 100 mM NaCl | 17.07 | HC |
| SRR6502106 | root | control | 13.07 | HC |
| SRR6502107 | root | control | 11.24 | HC |
| SRR6502108 | root | control | 13.91 | HC |
| SRR1740436 | root_differentiation_zone | wt | 5.46 | HC |
| SRR1740431 | root_elongation_zone | wt | 6.33 | HC |
| SRR1740432 | root_elongation_zone | wt | 8.88 | HC |
| SRR1740433 | root_elongation_zone | wt | 7.70 | HC |
| SRR1740428 | root_meristematic_zone | wt | 14.30 | HC |
| SRR1740429 | root_meristematic_zone | wt | 19.29 | HC |
| SRR1740430 | root_meristematic_zone | wt | 20.74 | HC |
| SRR6441554 | seedling | wild_type | 4.29 | HC |
| SRR2154086 | seedling | wt | 5.91 | HC |
| SRR2154082 | seedling | wt | 5.98 | HC |
| SRR2154083 | seedling | wt | 5.56 | HC |
| SRR2154084 | seedling | wt | 7.46 | HC |
| SRR2154085 | seedling | wt | 5.40 | HC |
| SRR2154087 | seedling | wt | 5.46 | HC |
| SRR3098742 | seedling | wt | 2.91 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 6.02 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.38 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.81 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.13 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.97 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.06 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.53 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.88 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.99 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.16 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.31 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 25.45 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 26.35 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 24.47 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 25.23 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 23.67 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 21.64 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 26.49 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 25.31 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 25.22 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 22.02 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 23.15 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 29.80 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 28.64 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 30.90 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 26.54 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 29.73 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 29.90 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 28.20 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 31.22 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 31.13 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 29.08 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 26.58 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 27.92 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 11.30 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 10.28 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 7.83 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 6.35 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 4.59 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 9.32 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 7.61 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 9.33 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 7.50 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 9.43 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 8.83 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 8.50 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 7.15 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 5.37 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 5.82 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 5.89 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 6.08 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 8.55 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 5.86 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 7.23 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 3.83 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 5.52 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 4.46 | HC |