| SRR3745125 | anther | wt | 15.88 | HC |
| SRR3745126 | anther | wt | 15.50 | HC |
| SRR3745127 | anther | wt | 18.39 | HC |
| SRR358795 | callus | wt | 10.13 | HC |
| SRR358796 | callus | wt | 10.60 | HC |
| SRR358797 | callus | wt | 10.25 | HC |
| SRR358798 | callus | wt | 9.59 | HC |
| SRR5560728 | caryopsis | wild_type | 7.17 | HC |
| SRR5560729 | caryopsis | wild_type | 11.20 | HC |
| SRR7265400 | coleoptile | 2dA | 5.42 | HC |
| SRR7265401 | coleoptile | 2dA | 5.09 | HC |
| SRR7265404 | coleoptile | 2dN | 4.70 | HC |
| SRR7265407 | coleoptile | 3dA | 5.34 | HC |
| SRR7265408 | coleoptile | 3dA | 3.90 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 4.13 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 9.17 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 13.66 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 8.99 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 11.19 | HC |
| SRR7265392 | embryo | 12hN | 4.84 | HC |
| SRR7265395 | embryo | 24hA | 5.30 | HC |
| SRR2338866 | endosprem | control | 19.02 | HC |
| SRR2338867 | endosprem | control | 6.44 | HC |
| SRR2338868 | endosprem | high_temperature | 4.45 | HC |
| SRR2338869 | endosprem | high_temperature | 8.90 | HC |
| SRR1213690 | flower | wt(flower buds) | 7.79 | HC |
| SRR1213691 | flower | wt | 10.14 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.65 | HC |
| SRR4947496 | root | control | 21.59 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 9.00 | HC |
| SRR1633185 | panicle | WT | 7.18 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 17.11 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 16.16 | HC |
| SRR5126147 | root | "mock,1_day" | 12.34 | HC |
| SRR5126148 | root | "mock,1_day" | 9.37 | HC |
| SRR5126149 | root | "mock,1_day" | 13.97 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 11.44 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 12.85 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 9.44 | HC |
| SRR5126153 | root | "mock,7_days" | 7.64 | HC |
| SRR5126155 | root | "mock,7_days" | 8.73 | HC |
| SRR5126157 | root | "mock,7_days" | 8.41 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 11.82 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 12.26 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 11.19 | HC |
| SRR5126165 | root | "mock,14_days" | 12.72 | HC |
| SRR5126167 | root | "mock,14_days" | 9.55 | HC |
| SRR5126169 | root | "mock,14_days" | 8.94 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 9.91 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 11.53 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 12.68 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 13.56 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 17.22 | HC |
| SRR1213694 | root | wt | 7.89 | HC |
| SRR4947480 | root | control | 18.83 | HC |
| SRR4947481 | root | control | 22.90 | HC |
| SRR4947484 | root | Al | 19.77 | HC |
| SRR4947485 | root | Al | 14.65 | HC |
| SRR4947488 | root | control | 19.47 | HC |
| SRR4947489 | root | control | 16.60 | HC |
| SRR4947492 | root | Al | 19.45 | HC |
| SRR4947493 | root | Al | 17.87 | HC |
| SRR4947497 | root | control | 25.91 | HC |
| SRR4947500 | root | Al | 22.27 | HC |
| SRR4947501 | root | Al | 30.63 | HC |
| SRR4947504 | root | control | 20.95 | HC |
| SRR4947505 | root | control | 19.28 | HC |
| SRR4947508 | root | Al | 21.24 | HC |
| SRR4947509 | root | Al | 20.76 | HC |
| SRR6502091 | root | 100 mM NaCl | 8.45 | HC |
| SRR6502092 | root | 100 mM NaCl | 7.42 | HC |
| SRR6502093 | root | 100 mM NaCl | 8.55 | HC |
| SRR6502094 | root | control | 5.58 | HC |
| SRR6502096 | root | control | 7.29 | HC |
| SRR6502103 | root | 100 mM NaCl | 16.51 | HC |
| SRR6502104 | root | 100 mM NaCl | 16.94 | HC |
| SRR6502105 | root | 100 mM NaCl | 11.64 | HC |
| SRR6502106 | root | control | 11.93 | HC |
| SRR6502107 | root | control | 10.95 | HC |
| SRR6502108 | root | control | 14.65 | HC |
| SRR1740434 | root_differentiation_zone | wt | 10.31 | HC |
| SRR1740435 | root_differentiation_zone | wt | 25.11 | HC |
| SRR1740436 | root_differentiation_zone | wt | 20.15 | HC |
| SRR1740431 | root_elongation_zone | wt | 13.73 | HC |
| SRR1740432 | root_elongation_zone | wt | 18.14 | HC |
| SRR1740433 | root_elongation_zone | wt | 14.93 | HC |
| SRR1740428 | root_meristematic_zone | wt | 11.51 | HC |
| SRR1740429 | root_meristematic_zone | wt | 20.61 | HC |
| SRR1740430 | root_meristematic_zone | wt | 11.45 | HC |
| SRR2154086 | seedling | wt | 5.64 | HC |
| SRR2154087 | seedling | wt | 5.65 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.98 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 7.74 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 32.61 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 34.97 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 49.41 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 22.43 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 43.26 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 40.62 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 22.91 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 39.78 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 18.18 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 21.89 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 29.42 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 18.37 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 9.08 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 11.10 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 10.06 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 9.61 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 7.01 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 6.44 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 5.99 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.69 | HC |