| SRR3745126 | anther | wt | 7.66 | HC |
| SRR3745127 | anther | wt | 6.28 | HC |
| SRR5560727 | caryopsis | wild_type | 19.64 | HC |
| SRR5560728 | caryopsis | wild_type | 19.94 | HC |
| SRR5560729 | caryopsis | wild_type | 26.07 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 23.09 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 19.11 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 11.69 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 20.09 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 7.72 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 8.70 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 4.81 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.94 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 4.04 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 4.97 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 7.48 | HC |
| SRR2338866 | endosprem | control | 7.07 | HC |
| SRR2338867 | endosprem | control | 4.88 | HC |
| SRR2338868 | endosprem | high_temperature | 4.86 | HC |
| SRR2338869 | endosprem | high_temperature | 4.05 | HC |
| SRR4457235 | flag_leaf | DAH12 | 4.21 | HC |
| SRR4457236 | flag_leaf | DAH12 | 3.77 | HC |
| SRR1213690 | flower | wt(flower buds) | 9.53 | HC |
| SRR1213691 | flower | wt | 12.32 | HC |
| SRR8060835 | leaf | wild_type | 7.23 | HC |
| SRR8060836 | leaf | wild_type | 16.49 | HC |
| SRR8060837 | leaf | wild_type | 5.69 | HC |
| SRR8240824 | leaf | wild_type | 9.87 | HC |
| SRR8240825 | leaf | wild_type | 9.14 | HC |
| SRR8240826 | leaf | wild_type | 4.91 | HC |
| SRR8240818 | leaf | wild_type | 7.56 | HC |
| SRR8240819 | leaf | wild_type | 8.53 | HC |
| SRR8240820 | leaf | wild_type | 10.93 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 17.44 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 17.74 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 11.49 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 15.83 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.58 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.84 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 8.49 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.57 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 9.57 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.77 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.94 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.03 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 7.18 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.88 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.80 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.86 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.31 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 6.26 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 11.88 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 7.76 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.66 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.37 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.82 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.94 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 9.49 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 9.13 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.67 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 9.67 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 9.60 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 7.96 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.37 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.08 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 7.67 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.11 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 12.28 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 11.89 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 10.49 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 9.20 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 8.31 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 9.20 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 8.31 | HC |
| SRR1761530 | leaf | control | 9.20 | HC |
| SRR1761531 | leaf | control | 8.31 | HC |
| SRR504365 | leaf | wt | 9.70 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 7.30 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.00 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.92 | HC |
| SRR6417967 | leaf | H2O_control | 8.90 | HC |
| SRR6417968 | leaf | H2O_control | 8.14 | HC |
| SRR6417969 | leaf | H2O_control | 12.92 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 9.96 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 9.53 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 4.87 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 5.97 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 4.10 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 4.38 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 10.26 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 5.65 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 4.84 | HC |
| SRR8611900 | leaf | Non-inoculated | 9.87 | HC |
| SRR8611901 | leaf | Non-inoculated | 10.52 | HC |
| SRR8611902 | leaf | Non-inoculated | 7.64 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 5.85 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 5.19 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 5.31 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 7.68 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 9.10 | HC |
| SRR1213692 | leaf | wt | 13.04 | HC |
| SRR1213693 | leaf | wt | 6.36 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 10.16 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 13.02 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 11.75 | HC |
| SRR6502088 | leaf | control | 10.97 | HC |
| SRR6502089 | leaf | control | 9.66 | HC |
| SRR6502090 | leaf | control | 11.68 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 13.83 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 12.05 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 12.52 | HC |
| SRR6502100 | leaf | control | 14.08 | HC |
| SRR6502101 | leaf | control | 12.09 | HC |
| SRR6502102 | leaf | control | 10.99 | HC |
| SRR5856933 | leaf | control | 3.38 | HC |
| SRR5856934 | leaf | control | 2.70 | HC |
| SRR5856935 | leaf | control | 2.96 | HC |
| SRR5856936 | leaf | salt | 2.04 | HC |
| SRR5856937 | leaf | salt | 2.28 | HC |
| SRR5856938 | leaf | salt | 2.38 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 13.28 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 11.56 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 9.35 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 10.06 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 8.12 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 9.17 | HC |
| SRR6168973 | leaf | none (control) | 16.22 | HC |
| SRR6168974 | leaf | none (control) | 17.30 | HC |
| SRR6168975 | leaf | none (control) | 11.42 | HC |
| SRR6168981 | leaf | none (control) | 3.41 | HC |
| SRR8582888 | panicle | AM | 11.42 | HC |
| SRR8582889 | panicle | AM | 8.90 | HC |
| SRR8582890 | panicle | AM | 11.39 | HC |
| SRR8582891 | panicle | PM | 15.25 | HC |
| SRR8582892 | panicle | PM | 18.21 | HC |
| SRR8582893 | panicle | PM | 18.16 | HC |
| SRR5110432 | panicle | Dawn | 4.73 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 4.89 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 4.04 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 5.50 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.81 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 4.57 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 5.46 | HC |
| SRR5110446 | panicle | Dusk | 5.28 | HC |
| SRR5110451 | panicle | Dawn + 14h | 4.08 | HC |
| SRR5110452 | panicle | Dawn + 14h | 6.46 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 5.12 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 5.72 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.48 | HC |
| SRR5110457 | panicle | Dawn + 21h | 4.39 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 7.44 | HC |
| SRR1633182 | panicle | WT | 5.45 | HC |
| SRR1633185 | panicle | WT | 7.39 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 7.39 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 7.66 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 11.31 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 9.27 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 14.59 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 12.53 | HC |
| SRR5126147 | root | "mock,1_day" | 8.02 | HC |
| SRR5126148 | root | "mock,1_day" | 8.27 | HC |
| SRR5126149 | root | "mock,1_day" | 11.38 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 15.93 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 13.39 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 14.10 | HC |
| SRR5126153 | root | "mock,7_days" | 9.90 | HC |
| SRR5126155 | root | "mock,7_days" | 11.63 | HC |
| SRR5126157 | root | "mock,7_days" | 12.48 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 14.91 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 12.71 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 12.20 | HC |
| SRR5126165 | root | "mock,14_days" | 10.66 | HC |
| SRR5126167 | root | "mock,14_days" | 7.10 | HC |
| SRR5126169 | root | "mock,14_days" | 10.07 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 10.82 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 15.47 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 11.12 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 7.02 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 6.93 | HC |
| SRR1213694 | root | wt | 6.52 | HC |
| SRR1213695 | root | wt | 5.89 | HC |
| SRR6502091 | root | 100 mM NaCl | 9.99 | HC |
| SRR6502092 | root | 100 mM NaCl | 9.90 | HC |
| SRR6502093 | root | 100 mM NaCl | 8.61 | HC |
| SRR6502094 | root | control | 10.38 | HC |
| SRR6502095 | root | control | 11.40 | HC |
| SRR6502096 | root | control | 8.40 | HC |
| SRR6502103 | root | 100 mM NaCl | 8.30 | HC |
| SRR6502104 | root | 100 mM NaCl | 7.90 | HC |
| SRR6502105 | root | 100 mM NaCl | 12.59 | HC |
| SRR6502106 | root | control | 11.45 | HC |
| SRR6502107 | root | control | 8.46 | HC |
| SRR6502108 | root | control | 9.46 | HC |
| SRR1740434 | root_differentiation_zone | wt | 6.66 | HC |
| SRR1740435 | root_differentiation_zone | wt | 5.43 | HC |
| SRR1740436 | root_differentiation_zone | wt | 3.90 | HC |
| SRR1740433 | root_elongation_zone | wt | 3.41 | HC |
| SRR6441554 | seedling | wild_type | 8.57 | HC |
| SRR6441555 | seedling | wild_type | 8.61 | HC |
| SRR2154086 | seedling | wt | 7.10 | HC |
| SRR2154082 | seedling | wt | 4.69 | HC |
| SRR2154083 | seedling | wt | 9.53 | HC |
| SRR2154084 | seedling | wt | 3.99 | HC |
| SRR2154085 | seedling | wt | 8.80 | HC |
| SRR2154087 | seedling | wt | 5.41 | HC |
| SRR3098741 | seedling | wt | 8.50 | HC |
| SRR3098742 | seedling | wt | 10.11 | HC |
| SRR3098743 | seedling | wt | 8.62 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.95 | HC |
| SRR2857720 | seedling | drought_stress_1h | 4.33 | HC |
| SRR1944583 | seedling | no_treatment | 10.37 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.81 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.13 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 7.06 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 7.37 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 4.19 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.93 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 4.64 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 12.63 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 9.32 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 11.36 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 10.85 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 11.98 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 10.52 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 12.78 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 11.34 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 13.61 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 16.38 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 10.37 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 12.03 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 8.40 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 8.50 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.97 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.68 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 15.64 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 13.34 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 13.89 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 15.98 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 15.12 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 18.34 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 18.19 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 16.51 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 15.54 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 14.75 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 15.06 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 12.83 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 12.36 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 14.10 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 14.41 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 16.87 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 14.55 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 16.68 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 17.18 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 12.92 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 16.02 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 13.91 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 16.00 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 15.90 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 7.87 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 4.05 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 5.37 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 5.58 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 9.05 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 7.76 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 8.10 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 6.01 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 5.06 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 6.33 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.71 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 4.14 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 3.82 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 5.30 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 5.08 | HC |