| SRR358795 | callus | wt | 14.15 | HC |
| SRR358796 | callus | wt | 12.90 | HC |
| SRR358797 | callus | wt | 13.31 | HC |
| SRR358798 | callus | wt | 17.01 | HC |
| SRR6320473 | carpel | wt | 17.63 | HC |
| SRR6320498 | carpel | wt | 20.10 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 8.52 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 9.14 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 9.59 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 12.87 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 12.95 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 8.45 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 10.77 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 10.32 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 10.25 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 10.72 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 12.17 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 10.62 | HC |
| SRR2338866 | endosprem | control | 6.79 | HC |
| SRR2338867 | endosprem | control | 3.09 | HC |
| SRR2338868 | endosprem | high_temperature | 4.97 | HC |
| SRR2338869 | endosprem | high_temperature | 5.79 | HC |
| SRR1213690 | flower | wt(flower buds) | 11.32 | HC |
| SRR1213691 | flower | wt | 10.92 | HC |
| SRR8060835 | leaf | wild_type | 8.34 | HC |
| SRR8060836 | leaf | wild_type | 15.76 | HC |
| SRR8060837 | leaf | wild_type | 7.94 | HC |
| SRR8240824 | leaf | wild_type | 3.84 | HC |
| SRR8240825 | leaf | wild_type | 3.21 | HC |
| SRR8240826 | leaf | wild_type | 3.11 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 12.09 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.10 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 11.47 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 12.17 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 9.72 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 9.70 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 9.90 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.00 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.60 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 12.66 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 10.18 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 10.94 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 12.27 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 10.11 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 10.58 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 8.43 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 8.18 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 7.19 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.78 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.49 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.76 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 11.68 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.81 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.12 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 11.25 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 8.48 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 8.76 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 11.40 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 11.16 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 11.65 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 10.75 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.32 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.18 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 11.62 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 11.72 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 9.96 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 15.63 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 14.38 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 13.55 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 12.50 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 15.63 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 14.38 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 13.55 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 12.50 | HC |
| SRR1761528 | leaf | drought | 15.63 | HC |
| SRR1761529 | leaf | drought | 14.38 | HC |
| SRR1761530 | leaf | control | 13.55 | HC |
| SRR1761531 | leaf | control | 12.50 | HC |
| SRR504365 | leaf | wt | 9.75 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.97 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.87 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.00 | HC |
| SRR6417967 | leaf | H2O_control | 5.48 | HC |
| SRR6417968 | leaf | H2O_control | 4.50 | HC |
| SRR6417969 | leaf | H2O_control | 6.12 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 9.46 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 6.06 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 20.58 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 18.32 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 5.64 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 7.28 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 22.79 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 21.00 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 6.18 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 19.94 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 6.87 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 20.05 | HC |
| SRR8611900 | leaf | Non-inoculated | 10.42 | HC |
| SRR8611901 | leaf | Non-inoculated | 7.64 | HC |
| SRR8611902 | leaf | Non-inoculated | 7.76 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 6.24 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 4.57 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 4.99 | HC |
| SRR1213692 | leaf | wt | 9.47 | HC |
| SRR1213693 | leaf | wt | 10.17 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 14.65 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 11.49 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 12.66 | HC |
| SRR6502088 | leaf | control | 9.41 | HC |
| SRR6502089 | leaf | control | 8.38 | HC |
| SRR6502090 | leaf | control | 9.24 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 14.97 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 13.64 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 7.07 | HC |
| SRR6502100 | leaf | control | 7.74 | HC |
| SRR6502101 | leaf | control | 9.10 | HC |
| SRR6502102 | leaf | control | 9.40 | HC |
| SRR5856927 | leaf | control | 3.85 | HC |
| SRR5856928 | leaf | control | 3.86 | HC |
| SRR5856929 | leaf | control | 2.91 | HC |
| SRR5856930 | leaf | salt | 2.04 | HC |
| SRR5856931 | leaf | salt | 2.51 | HC |
| SRR5856932 | leaf | salt | 2.42 | HC |
| SRR5856933 | leaf | control | 4.85 | HC |
| SRR5856934 | leaf | control | 4.37 | HC |
| SRR5856935 | leaf | control | 5.43 | HC |
| SRR5856936 | leaf | salt | 3.86 | HC |
| SRR5856937 | leaf | salt | 3.53 | HC |
| SRR5856938 | leaf | salt | 4.08 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 10.32 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 10.76 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 3.69 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.82 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 4.40 | HC |
| SRR8582888 | panicle | AM | 7.38 | HC |
| SRR8582889 | panicle | AM | 4.12 | HC |
| SRR8582890 | panicle | AM | 6.10 | HC |
| SRR8582891 | panicle | PM | 10.87 | HC |
| SRR8582892 | panicle | PM | 12.16 | HC |
| SRR8582893 | panicle | PM | 10.45 | HC |
| SRR5110429 | panicle | Dawn | 15.43 | HC |
| SRR5110430 | panicle | Dawn | 10.50 | HC |
| SRR5110431 | panicle | Dawn | 11.49 | HC |
| SRR5110432 | panicle | Dawn | 10.70 | HC |
| SRR4947496 | root | control | 5.41 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 8.57 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 9.04 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 8.77 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 7.62 | HC |
| SRR5110437 | panicle | Dawn + 7h | 8.56 | HC |
| SRR5110438 | panicle | Dawn + 7h | 9.55 | HC |
| SRR5110439 | panicle | Dawn + 7h | 9.65 | HC |
| SRR5110440 | panicle | Dawn + 7h | 10.91 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 9.03 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 9.66 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 7.88 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 13.12 | HC |
| SRR5110445 | panicle | Dusk | 9.63 | HC |
| SRR5110446 | panicle | Dusk | 11.76 | HC |
| SRR5110447 | panicle | Dusk | 11.42 | HC |
| SRR5110448 | panicle | Dusk | 16.13 | HC |
| SRR5110449 | panicle | Dawn + 14h | 11.55 | HC |
| SRR5110450 | panicle | Dawn + 14h | 9.39 | HC |
| SRR5110451 | panicle | Dawn + 14h | 11.09 | HC |
| SRR5110452 | panicle | Dawn + 14h | 14.96 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 10.31 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 8.49 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 8.24 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 13.16 | HC |
| SRR5110457 | panicle | Dawn + 21h | 9.84 | HC |
| SRR5110458 | panicle | Dawn + 21h | 8.81 | HC |
| SRR5110459 | panicle | Dawn + 21h | 10.54 | HC |
| SRR5110460 | panicle | Dawn + 21h | 14.40 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.95 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 3.64 | HC |
| SRR5126147 | root | "mock,1_day" | 9.22 | HC |
| SRR5126148 | root | "mock,1_day" | 6.83 | HC |
| SRR5126149 | root | "mock,1_day" | 10.33 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 10.91 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 12.13 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 9.35 | HC |
| SRR5126153 | root | "mock,7_days" | 7.97 | HC |
| SRR5126155 | root | "mock,7_days" | 9.90 | HC |
| SRR5126157 | root | "mock,7_days" | 14.06 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 7.82 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 9.86 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 10.58 | HC |
| SRR5126165 | root | "mock,14_days" | 11.29 | HC |
| SRR5126167 | root | "mock,14_days" | 7.24 | HC |
| SRR5126169 | root | "mock,14_days" | 10.72 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 8.37 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 9.35 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 10.88 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.82 | HC |
| SRR1213694 | root | wt | 3.84 | HC |
| SRR1213695 | root | wt | 9.03 | HC |
| SRR4947480 | root | control | 5.50 | HC |
| SRR4947481 | root | control | 7.98 | HC |
| SRR4947484 | root | Al | 5.28 | HC |
| SRR4947485 | root | Al | 5.60 | HC |
| SRR4947487 | root | control | 4.94 | HC |
| SRR4947488 | root | control | 5.86 | HC |
| SRR4947489 | root | control | 7.29 | HC |
| SRR4947490 | root | Al | 4.57 | HC |
| SRR4947491 | root | Al | 6.53 | HC |
| SRR4947492 | root | Al | 7.48 | HC |
| SRR4947494 | root | control | 4.79 | HC |
| SRR4947497 | root | control | 6.93 | HC |
| SRR4947501 | root | Al | 8.24 | HC |
| SRR4947502 | root | control | 5.68 | HC |
| SRR4947503 | root | control | 5.94 | HC |
| SRR4947504 | root | control | 7.34 | HC |
| SRR4947505 | root | control | 7.89 | HC |
| SRR4947507 | root | Al | 6.40 | HC |
| SRR6502091 | root | 100 mM NaCl | 13.72 | HC |
| SRR6502092 | root | 100 mM NaCl | 13.91 | HC |
| SRR6502093 | root | 100 mM NaCl | 14.74 | HC |
| SRR6502094 | root | control | 9.17 | HC |
| SRR6502095 | root | control | 8.33 | HC |
| SRR6502096 | root | control | 8.64 | HC |
| SRR6502103 | root | 100 mM NaCl | 12.94 | HC |
| SRR6502104 | root | 100 mM NaCl | 12.70 | HC |
| SRR6502105 | root | 100 mM NaCl | 13.27 | HC |
| SRR6502106 | root | control | 8.70 | HC |
| SRR6502107 | root | control | 8.64 | HC |
| SRR6502108 | root | control | 9.91 | HC |
| SRR6441554 | seedling | wild_type | 4.29 | HC |
| SRR6441555 | seedling | wild_type | 7.51 | HC |
| SRR2154086 | seedling | wt | 4.81 | HC |
| SRR2154082 | seedling | wt | 9.20 | HC |
| SRR2154083 | seedling | wt | 7.43 | HC |
| SRR2154084 | seedling | wt | 9.33 | HC |
| SRR2154085 | seedling | wt | 10.31 | HC |
| SRR3098741 | seedling | wt | 6.88 | HC |
| SRR3098742 | seedling | wt | 7.23 | HC |
| SRR3098743 | seedling | wt | 3.08 | HC |
| SRR2857719 | seedling | drought_stress_0h | 6.32 | HC |
| SRR2857720 | seedling | drought_stress_1h | 7.76 | HC |
| SRR2857721 | seedling | drought_stress_6h | 6.08 | HC |
| SRR1944583 | seedling | no_treatment | 4.81 | HC |
| SRR358791 | seedling | wt | 9.15 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 6.39 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.93 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 6.92 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 5.31 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 7.93 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 5.82 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 5.19 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 4.24 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 7.70 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.95 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.72 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.25 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 7.52 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 7.51 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 9.47 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 9.21 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 9.85 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 9.01 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.41 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.44 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.50 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.10 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.66 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 6.31 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 7.68 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.71 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 8.93 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 13.14 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 10.91 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 9.08 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 18.85 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 9.90 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 8.72 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 19.30 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 9.67 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 12.39 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 11.48 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 9.04 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 14.23 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 11.07 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 15.26 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 12.67 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 10.74 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 13.44 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 11.18 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 10.24 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 11.05 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 9.99 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 8.98 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 9.45 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 7.45 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 10.05 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 8.40 | HC |