| SRR358796 | callus | wt | 11.90 | HC |
| SRR358798 | callus | wt | 9.69 | HC |
| SRR6320473 | carpel | wt | 13.31 | HC |
| SRR6320498 | carpel | wt | 12.95 | HC |
| SRR5560727 | caryopsis | wild_type | 9.42 | HC |
| SRR5560728 | caryopsis | wild_type | 10.93 | HC |
| SRR5560729 | caryopsis | wild_type | 14.78 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 15.00 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 15.15 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 13.52 | HC |
| SRR4947495 | root | control | 6.83 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 13.53 | HC |
| SRR7265400 | coleoptile | 2dA | 10.77 | HC |
| SRR7265401 | coleoptile | 2dA | 10.63 | HC |
| SRR7265402 | coleoptile | 2dA | 10.13 | HC |
| SRR7265403 | coleoptile | 2dN | 11.86 | HC |
| SRR7265404 | coleoptile | 2dN | 13.09 | HC |
| SRR7265405 | coleoptile | 2dN | 12.10 | HC |
| SRR7265406 | coleoptile | 3dA | 8.25 | HC |
| SRR7265407 | coleoptile | 3dA | 7.78 | HC |
| SRR7265408 | coleoptile | 3dA | 5.18 | HC |
| SRR7265409 | coleoptile | 3dN | 8.03 | HC |
| SRR7265410 | coleoptile | 3dN | 8.05 | HC |
| SRR7265411 | coleoptile | 3dN | 6.83 | HC |
| SRR7265412 | coleoptile | 4dA | 4.49 | HC |
| SRR7265413 | coleoptile | 4dA | 9.67 | HC |
| SRR7265414 | coleoptile | 4dA | 6.11 | HC |
| SRR7265415 | coleoptile | 4dN | 8.94 | HC |
| SRR7265416 | coleoptile | 4dN | 8.82 | HC |
| SRR7265417 | coleoptile | 4dN | 8.23 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 7.01 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 6.08 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 6.33 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 11.73 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 14.87 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 5.49 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 12.25 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 4.59 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 6.02 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 7.71 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 10.09 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 7.34 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 13.30 | HC |
| SRR7265373 | embryo | dry seed 0 h | 12.17 | HC |
| SRR7265374 | embryo | dry seed 0 h | 14.86 | HC |
| SRR7265375 | embryo | dry seed 0 h | 4.57 | HC |
| SRR7265376 | embryo | 1hA | 11.08 | HC |
| SRR7265377 | embryo | 1hA | 10.91 | HC |
| SRR7265378 | embryo | 1hA | 11.19 | HC |
| SRR7265379 | embryo | 1hN | 13.01 | HC |
| SRR7265380 | embryo | 1hN | 12.34 | HC |
| SRR7265381 | embryo | 1hN | 13.17 | HC |
| SRR7265382 | embryo | 3hA | 9.99 | HC |
| SRR7265383 | embryo | 3hA | 10.33 | HC |
| SRR7265384 | embryo | 3hA | 11.88 | HC |
| SRR7265385 | embryo | 3hN | 12.59 | HC |
| SRR7265386 | embryo | 3hN | 11.97 | HC |
| SRR7265387 | embryo | 3hN | 10.21 | HC |
| SRR7265388 | embryo | 12hA | 15.79 | HC |
| SRR7265389 | embryo | 12hA | 16.49 | HC |
| SRR7265390 | embryo | 12hA | 16.86 | HC |
| SRR7265391 | embryo | 12hN | 14.53 | HC |
| SRR7265392 | embryo | 12hN | 12.27 | HC |
| SRR7265393 | embryo | 12hN | 12.30 | HC |
| SRR7265394 | embryo | 24hA | 13.33 | HC |
| SRR7265395 | embryo | 24hA | 14.24 | HC |
| SRR7265396 | embryo | 24hA | 14.03 | HC |
| SRR7265397 | embryo | 24hN | 16.33 | HC |
| SRR7265398 | embryo | 24hN | 14.59 | HC |
| SRR7265399 | embryo | 24hN | 16.42 | HC |
| SRR1213690 | flower | wt(flower buds) | 9.71 | HC |
| SRR1213691 | flower | wt | 11.19 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 11.58 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 8.86 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 10.73 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 12.07 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.32 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.28 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.78 | HC |
| SRR8611900 | leaf | Non-inoculated | 3.96 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.87 | HC |
| SRR8611902 | leaf | Non-inoculated | 3.81 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 8.50 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 8.70 | HC |
| SRR5856928 | leaf | control | 2.67 | HC |
| SRR5856929 | leaf | control | 2.35 | HC |
| SRR5856930 | leaf | salt | 4.01 | HC |
| SRR5856931 | leaf | salt | 3.63 | HC |
| SRR5856932 | leaf | salt | 4.06 | HC |
| SRR5856933 | leaf | control | 2.81 | HC |
| SRR5856934 | leaf | control | 3.32 | HC |
| SRR5856935 | leaf | control | 3.15 | HC |
| SRR5856936 | leaf | salt | 4.33 | HC |
| SRR5856937 | leaf | salt | 3.30 | HC |
| SRR5856938 | leaf | salt | 4.35 | HC |
| SRR6168973 | leaf | none (control) | 15.01 | HC |
| SRR6168974 | leaf | none (control) | 12.57 | HC |
| SRR6168975 | leaf | none (control) | 12.69 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 27.61 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 23.52 | HC |
| SRR6168979 | leaf | none (control) | 2.82 | HC |
| SRR6168980 | leaf | none (control) | 3.46 | HC |
| SRR6168981 | leaf | none (control) | 7.96 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 6.30 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 8.22 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 8.74 | HC |
| SRR5110429 | panicle | Dawn | 5.85 | HC |
| SRR4947496 | root | control | 7.49 | HC |
| SRR5110437 | panicle | Dawn + 7h | 4.35 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 4.12 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 6.63 | HC |
| SRR5110447 | panicle | Dusk | 6.76 | HC |
| SRR5110448 | panicle | Dusk | 8.52 | HC |
| SRR5110451 | panicle | Dawn + 14h | 5.69 | HC |
| SRR5110452 | panicle | Dawn + 14h | 6.00 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.45 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.13 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 8.39 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 9.47 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 10.72 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 12.33 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 14.01 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 24.16 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 25.69 | HC |
| SRR5126147 | root | "mock,1_day" | 13.10 | HC |
| SRR5126148 | root | "mock,1_day" | 13.07 | HC |
| SRR5126149 | root | "mock,1_day" | 15.16 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 12.03 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 12.35 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 9.32 | HC |
| SRR5126153 | root | "mock,7_days" | 10.40 | HC |
| SRR5126155 | root | "mock,7_days" | 11.92 | HC |
| SRR5126157 | root | "mock,7_days" | 12.73 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 13.97 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 12.32 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 15.97 | HC |
| SRR5126165 | root | "mock,14_days" | 8.15 | HC |
| SRR5126167 | root | "mock,14_days" | 8.86 | HC |
| SRR5126169 | root | "mock,14_days" | 10.94 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 12.99 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 12.15 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 17.26 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 9.69 | HC |
| SRR1213694 | root | wt | 11.63 | HC |
| SRR4947478 | root | control | 5.67 | HC |
| SRR4947479 | root | control | 6.38 | HC |
| SRR4947480 | root | control | 9.21 | HC |
| SRR4947481 | root | control | 6.60 | HC |
| SRR4947483 | root | Al | 4.91 | HC |
| SRR4947484 | root | Al | 8.22 | HC |
| SRR4947485 | root | Al | 11.02 | HC |
| SRR4947487 | root | control | 5.08 | HC |
| SRR4947488 | root | control | 7.04 | HC |
| SRR4947489 | root | control | 8.57 | HC |
| SRR4947490 | root | Al | 5.08 | HC |
| SRR4947491 | root | Al | 6.86 | HC |
| SRR4947492 | root | Al | 9.18 | HC |
| SRR4947493 | root | Al | 7.08 | HC |
| SRR4947497 | root | control | 7.58 | HC |
| SRR4947498 | root | Al | 7.63 | HC |
| SRR4947499 | root | Al | 7.31 | HC |
| SRR4947500 | root | Al | 10.41 | HC |
| SRR4947501 | root | Al | 8.37 | HC |
| SRR4947502 | root | control | 7.49 | HC |
| SRR4947503 | root | control | 6.82 | HC |
| SRR4947504 | root | control | 7.48 | HC |
| SRR4947505 | root | control | 9.41 | HC |
| SRR4947508 | root | Al | 12.44 | HC |
| SRR4947509 | root | Al | 10.93 | HC |
| SRR6502091 | root | 100 mM NaCl | 13.32 | HC |
| SRR6502092 | root | 100 mM NaCl | 11.03 | HC |
| SRR6502093 | root | 100 mM NaCl | 12.36 | HC |
| SRR6502094 | root | control | 12.26 | HC |
| SRR6502095 | root | control | 14.01 | HC |
| SRR6502096 | root | control | 10.92 | HC |
| SRR6502103 | root | 100 mM NaCl | 12.88 | HC |
| SRR6502104 | root | 100 mM NaCl | 16.16 | HC |
| SRR6502105 | root | 100 mM NaCl | 16.65 | HC |
| SRR6502106 | root | control | 12.07 | HC |
| SRR6502107 | root | control | 12.34 | HC |
| SRR6502108 | root | control | 12.82 | HC |
| SRR1740434 | root_differentiation_zone | wt | 4.44 | HC |
| SRR1740435 | root_differentiation_zone | wt | 4.74 | HC |
| SRR1740436 | root_differentiation_zone | wt | 5.92 | HC |
| SRR1740431 | root_elongation_zone | wt | 9.06 | HC |
| SRR1740432 | root_elongation_zone | wt | 13.38 | HC |
| SRR1740433 | root_elongation_zone | wt | 13.66 | HC |
| SRR1740428 | root_meristematic_zone | wt | 10.66 | HC |
| SRR1740429 | root_meristematic_zone | wt | 10.47 | HC |
| SRR1740430 | root_meristematic_zone | wt | 13.85 | HC |
| SRR6441555 | seedling | wild_type | 3.78 | HC |
| SRR2154086 | seedling | wt | 8.27 | HC |
| SRR2154082 | seedling | wt | 3.75 | HC |
| SRR2154083 | seedling | wt | 4.24 | HC |
| SRR2154084 | seedling | wt | 4.93 | HC |
| SRR2154085 | seedling | wt | 7.16 | HC |
| SRR2154087 | seedling | wt | 7.66 | HC |
| SRR2857719 | seedling | drought_stress_0h | 7.52 | HC |
| SRR2857720 | seedling | drought_stress_1h | 4.99 | HC |
| SRR2857721 | seedling | drought_stress_6h | 7.81 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 6.52 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.96 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.08 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.11 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.58 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 21.38 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 21.86 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 22.89 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 17.08 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 27.90 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 18.96 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 16.52 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 20.23 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 17.71 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 17.97 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 19.40 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 17.48 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 18.71 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 20.20 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 28.16 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 18.19 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 20.55 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 19.67 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 17.48 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 20.70 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 18.07 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 20.36 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 20.90 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 14.49 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 15.10 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 13.20 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 12.22 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 15.21 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 10.92 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 10.20 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 8.33 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 18.00 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 16.13 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 18.63 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 15.24 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 12.96 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 16.32 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 10.50 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 13.11 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 11.72 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 6.00 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 6.40 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 5.18 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 6.30 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 6.60 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 7.00 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 5.15 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 4.07 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 4.39 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 6.15 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 6.98 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 6.16 | HC |