| SRR4457249 | 2nd_leaf | DAH4 | 30.72 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 20.50 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 23.96 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 14.60 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 12.64 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 13.81 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 9.62 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 8.66 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 9.79 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 11.31 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 9.61 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 15.00 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 12.72 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 8.13 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 8.96 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 17.02 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 25.94 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 17.73 | HC |
| SRR5560727 | caryopsis | wild_type | 13.30 | HC |
| SRR5560728 | caryopsis | wild_type | 12.10 | HC |
| SRR5560729 | caryopsis | wild_type | 10.46 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 14.90 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 12.92 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 9.41 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 15.32 | HC |
| SRR2338867 | endosprem | control | 2.87 | HC |
| SRR976168 | flag_leaf | wild_type | 30.13 | HC |
| SRR4457231 | flag_leaf | DAH4 | 21.73 | HC |
| SRR4457232 | flag_leaf | DAH4 | 20.19 | HC |
| SRR4457233 | flag_leaf | DAH4 | 20.73 | HC |
| SRR4457234 | flag_leaf | DAH12 | 10.41 | HC |
| SRR4457235 | flag_leaf | DAH12 | 12.13 | HC |
| SRR4457236 | flag_leaf | DAH12 | 9.94 | HC |
| SRR4457237 | flag_leaf | DAH20 | 5.87 | HC |
| SRR4457238 | flag_leaf | DAH20 | 8.48 | HC |
| SRR4457239 | flag_leaf | DAH20 | 8.33 | HC |
| SRR4457240 | flag_leaf | DAH28 | 7.03 | HC |
| SRR4457241 | flag_leaf | DAH28 | 8.42 | HC |
| SRR4457242 | flag_leaf | DAH28 | 6.44 | HC |
| SRR4457243 | flag_leaf | DAH36 | 10.16 | HC |
| SRR4457244 | flag_leaf | DAH36 | 7.08 | HC |
| SRR4457245 | flag_leaf | DAH36 | 7.31 | HC |
| SRR4457246 | flag_leaf | DAH44 | 15.07 | HC |
| SRR4457247 | flag_leaf | DAH44 | 21.87 | HC |
| SRR4457248 | flag_leaf | DAH44 | 18.32 | HC |
| SRR8240824 | leaf | wild_type | 73.24 | HC |
| SRR8240825 | leaf | wild_type | 64.63 | HC |
| SRR8240826 | leaf | wild_type | 68.12 | HC |
| SRR8240818 | leaf | wild_type | 41.97 | HC |
| SRR8240819 | leaf | wild_type | 64.82 | HC |
| SRR8240820 | leaf | wild_type | 58.63 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 31.62 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 26.74 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 17.96 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 21.97 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 36.18 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 33.42 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 41.32 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 21.93 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 35.26 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 33.83 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 35.11 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 25.37 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 36.97 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 38.25 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 37.90 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 43.22 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 26.36 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 33.05 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 29.88 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 40.76 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 30.88 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 44.06 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 45.20 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 32.25 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 41.12 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 35.22 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 28.04 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 38.81 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 39.81 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 27.68 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 37.71 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 30.14 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 30.49 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 26.98 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 45.75 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 25.60 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 36.94 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 35.40 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 32.63 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 46.51 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 67.91 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 65.96 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 46.35 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 40.92 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 67.90 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 65.97 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 46.35 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 40.92 | HC |
| SRR1761528 | leaf | drought | 67.90 | HC |
| SRR1761529 | leaf | drought | 65.97 | HC |
| SRR1761530 | leaf | control | 46.36 | HC |
| SRR1761531 | leaf | control | 40.92 | HC |
| SRR504365 | leaf | wt | 41.11 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 13.02 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 17.02 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 18.88 | HC |
| SRR6417967 | leaf | H2O_control | 21.69 | HC |
| SRR6417968 | leaf | H2O_control | 22.65 | HC |
| SRR6417969 | leaf | H2O_control | 30.82 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 6.10 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 7.07 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 33.44 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 41.69 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 39.88 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 49.01 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 38.41 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 42.61 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 12.34 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 31.18 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 40.56 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 36.26 | HC |
| SRR8611900 | leaf | Non-inoculated | 103.30 | HC |
| SRR8611901 | leaf | Non-inoculated | 98.38 | HC |
| SRR8611902 | leaf | Non-inoculated | 99.48 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 113.03 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 117.80 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 112.87 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 40.29 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 43.64 | HC |
| SRR1213692 | leaf | wt | 96.30 | HC |
| SRR1213693 | leaf | wt | 73.95 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 36.83 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 40.57 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 35.76 | HC |
| SRR6502088 | leaf | control | 36.04 | HC |
| SRR6502089 | leaf | control | 31.31 | HC |
| SRR6502090 | leaf | control | 31.70 | HC |
| SRR6168973 | leaf | none (control) | 92.83 | HC |
| SRR6168974 | leaf | none (control) | 108.10 | HC |
| SRR6168975 | leaf | none (control) | 89.57 | HC |
| SRR6168979 | leaf | none (control) | 27.05 | HC |
| SRR6168980 | leaf | none (control) | 28.24 | HC |
| SRR6168981 | leaf | none (control) | 53.05 | HC |
| SRR8582888 | panicle | AM | 28.42 | HC |
| SRR8582889 | panicle | AM | 30.69 | HC |
| SRR8582890 | panicle | AM | 25.25 | HC |
| SRR8582891 | panicle | PM | 70.93 | HC |
| SRR8582892 | panicle | PM | 73.29 | HC |
| SRR8582893 | panicle | PM | 118.43 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.90 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 3.85 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 7.43 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.04 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 8.71 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 8.88 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 8.89 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 13.97 | HC |
| SRR5126155 | root | "mock,7_days" | 5.07 | HC |
| SRR5126157 | root | "mock,7_days" | 8.56 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.92 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 5.30 | HC |
| SRR5126167 | root | "mock,14_days" | 5.57 | HC |
| SRR5126169 | root | "mock,14_days" | 11.09 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 6.80 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 8.51 | HC |
| SRR1213694 | root | wt | 5.00 | HC |
| SRR1213695 | root | wt | 69.00 | HC |
| SRR6441554 | seedling | wild_type | 34.55 | HC |
| SRR6441555 | seedling | wild_type | 41.18 | HC |
| SRR2154086 | seedling | wt | 46.49 | HC |
| SRR2154085 | seedling | wt | 36.59 | HC |
| SRR2154087 | seedling | wt | 33.84 | HC |
| SRR3098741 | seedling | wt | 49.60 | HC |
| SRR3098742 | seedling | wt | 52.44 | HC |
| SRR3098743 | seedling | wt | 56.90 | HC |
| SRR2857719 | seedling | drought_stress_0h | 23.86 | HC |
| SRR2857720 | seedling | drought_stress_1h | 20.67 | HC |
| SRR2857721 | seedling | drought_stress_6h | 24.25 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 58.65 | HC |
| SRR1944583 | seedling | no_treatment | 21.90 | HC |
| SRR358791 | seedling | wt | 37.73 | HC |
| SRR358792 | seedling | wt | 40.73 | HC |
| SRR358793 | seedling | wt | 38.65 | HC |
| SRR358794 | seedling | wt | 40.52 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 15.97 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 30.27 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 11.88 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 17.29 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 29.14 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 22.89 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 15.23 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 14.81 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 25.52 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 32.23 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 42.49 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 55.05 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 78.87 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 51.41 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 129.61 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 181.26 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 134.51 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 255.32 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 316.45 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 115.87 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 197.78 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 250.86 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 26.81 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 31.85 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 33.44 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 37.27 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 35.21 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 37.44 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 42.60 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 39.84 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 52.05 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 56.69 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 25.83 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 22.90 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 34.16 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 32.90 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 29.39 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 24.46 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 48.52 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 42.06 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 61.11 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 69.52 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 13.54 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 10.48 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 10.09 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 14.17 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 15.91 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 13.45 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 20.79 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 19.95 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 20.96 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 12.00 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 11.30 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 7.98 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 7.12 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 11.19 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 10.21 | HC |