| SRR358795 | callus | wt | 23.30 | HC |
| SRR358796 | callus | wt | 21.54 | HC |
| SRR358797 | callus | wt | 24.06 | HC |
| SRR358798 | callus | wt | 22.48 | HC |
| SRR5560727 | caryopsis | wild_type | 10.09 | HC |
| SRR5560728 | caryopsis | wild_type | 14.13 | HC |
| SRR5560729 | caryopsis | wild_type | 21.11 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 8.29 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 9.56 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 7.78 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 13.65 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 10.83 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 17.61 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 7.09 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 17.51 | HC |
| SRR2338867 | endosprem | control | 4.85 | HC |
| SRR2338868 | endosprem | high_temperature | 6.70 | HC |
| SRR2338869 | endosprem | high_temperature | 7.20 | HC |
| SRR976168 | flag_leaf | wild_type | 12.72 | HC |
| SRR1213690 | flower | wt(flower buds) | 11.19 | HC |
| SRR1213691 | flower | wt | 10.60 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.69 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 8.90 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 9.72 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 16.53 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 11.84 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 16.32 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 22.76 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 14.65 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 13.23 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 17.49 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 16.24 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 16.05 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 14.46 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 13.82 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 15.34 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 19.94 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 17.41 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 14.69 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 14.64 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 14.22 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 16.04 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 17.91 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 14.36 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 12.67 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 14.78 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 14.66 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 15.00 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 17.46 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 14.75 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 12.59 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 17.67 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 17.94 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 14.01 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 16.19 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 15.80 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 16.18 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 13.75 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 13.36 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 11.52 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 5.92 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 6.84 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 11.22 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 13.85 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 5.92 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 6.84 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 11.22 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 13.85 | HC |
| SRR1761528 | leaf | drought | 5.92 | HC |
| SRR1761529 | leaf | drought | 6.84 | HC |
| SRR1761530 | leaf | control | 11.22 | HC |
| SRR1761531 | leaf | control | 13.85 | HC |
| SRR504365 | leaf | wt | 4.12 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.49 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.97 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.03 | HC |
| SRR6417967 | leaf | H2O_control | 6.10 | HC |
| SRR6417968 | leaf | H2O_control | 4.73 | HC |
| SRR6417969 | leaf | H2O_control | 4.54 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 10.54 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 9.81 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 5.44 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 4.63 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 16.54 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 22.03 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 6.99 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 6.54 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 4.99 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 5.84 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 17.24 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.76 | HC |
| SRR8611900 | leaf | Non-inoculated | 8.12 | HC |
| SRR8611901 | leaf | Non-inoculated | 8.40 | HC |
| SRR8611902 | leaf | Non-inoculated | 7.77 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 4.92 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 5.32 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 4.98 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 8.35 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 9.42 | HC |
| SRR1213692 | leaf | wt | 6.36 | HC |
| SRR1213693 | leaf | wt | 5.97 | HC |
| SRR6168973 | leaf | none (control) | 8.16 | HC |
| SRR6168974 | leaf | none (control) | 10.15 | HC |
| SRR6168975 | leaf | none (control) | 5.63 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 13.39 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 11.11 | HC |
| SRR8582888 | panicle | AM | 5.19 | HC |
| SRR8582889 | panicle | AM | 2.32 | HC |
| SRR8582890 | panicle | AM | 3.63 | HC |
| SRR8582891 | panicle | PM | 7.53 | HC |
| SRR8582892 | panicle | PM | 10.87 | HC |
| SRR8582893 | panicle | PM | 5.82 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 5.42 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 4.03 | HC |
| SRR5126147 | root | "mock,1_day" | 13.26 | HC |
| SRR5126148 | root | "mock,1_day" | 11.93 | HC |
| SRR5126149 | root | "mock,1_day" | 14.20 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 15.20 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 15.31 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 13.01 | HC |
| SRR5126153 | root | "mock,7_days" | 10.17 | HC |
| SRR5126155 | root | "mock,7_days" | 11.16 | HC |
| SRR5126157 | root | "mock,7_days" | 20.37 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 15.98 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 17.29 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 17.41 | HC |
| SRR5126165 | root | "mock,14_days" | 15.02 | HC |
| SRR5126167 | root | "mock,14_days" | 7.91 | HC |
| SRR5126169 | root | "mock,14_days" | 14.61 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 16.35 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 16.10 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 19.41 | HC |
| SRR1213694 | root | wt | 4.45 | HC |
| SRR1213695 | root | wt | 8.51 | HC |
| SRR4947480 | root | control | 5.88 | HC |
| SRR4947481 | root | control | 10.04 | HC |
| SRR4947484 | root | Al | 7.98 | HC |
| SRR4947485 | root | Al | 6.55 | HC |
| SRR4947488 | root | control | 7.16 | HC |
| SRR4947489 | root | control | 7.15 | HC |
| SRR4947492 | root | Al | 8.61 | HC |
| SRR4947493 | root | Al | 6.44 | HC |
| SRR4947497 | root | control | 9.42 | HC |
| SRR4947500 | root | Al | 9.85 | HC |
| SRR4947501 | root | Al | 12.48 | HC |
| SRR4947504 | root | control | 8.58 | HC |
| SRR4947505 | root | control | 8.57 | HC |
| SRR4947508 | root | Al | 8.10 | HC |
| SRR4947509 | root | Al | 8.68 | HC |
| SRR6502091 | root | 100 mM NaCl | 12.65 | HC |
| SRR6502092 | root | 100 mM NaCl | 12.92 | HC |
| SRR6502093 | root | 100 mM NaCl | 13.68 | HC |
| SRR6502094 | root | control | 11.31 | HC |
| SRR6502095 | root | control | 12.19 | HC |
| SRR6502096 | root | control | 8.11 | HC |
| SRR6502103 | root | 100 mM NaCl | 10.90 | HC |
| SRR6502104 | root | 100 mM NaCl | 12.63 | HC |
| SRR6502105 | root | 100 mM NaCl | 11.62 | HC |
| SRR6502106 | root | control | 8.76 | HC |
| SRR6502107 | root | control | 9.19 | HC |
| SRR6502108 | root | control | 11.80 | HC |
| SRR1740435 | root_differentiation_zone | wt | 3.52 | HC |
| SRR1740436 | root_differentiation_zone | wt | 5.45 | HC |
| SRR1740431 | root_elongation_zone | wt | 8.38 | HC |
| SRR1740432 | root_elongation_zone | wt | 16.20 | HC |
| SRR1740433 | root_elongation_zone | wt | 12.95 | HC |
| SRR1740428 | root_meristematic_zone | wt | 9.15 | HC |
| SRR1740429 | root_meristematic_zone | wt | 11.05 | HC |
| SRR1740430 | root_meristematic_zone | wt | 13.36 | HC |
| SRR6441554 | seedling | wild_type | 5.07 | HC |
| SRR6441555 | seedling | wild_type | 3.97 | HC |
| SRR2154086 | seedling | wt | 8.19 | HC |
| SRR2154082 | seedling | wt | 8.25 | HC |
| SRR2154085 | seedling | wt | 5.55 | HC |
| SRR3098741 | seedling | wt | 8.48 | HC |
| SRR3098742 | seedling | wt | 12.79 | HC |
| SRR3098743 | seedling | wt | 4.12 | HC |
| SRR2857719 | seedling | drought_stress_0h | 13.43 | HC |
| SRR2857720 | seedling | drought_stress_1h | 9.12 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.40 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.64 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 5.30 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 4.67 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 5.68 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.45 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.49 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 4.14 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.63 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.20 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 5.25 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.28 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.35 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.72 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.77 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.28 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.33 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 35.91 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 32.10 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 34.96 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 26.49 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 40.33 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 25.50 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 34.61 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 32.75 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 26.40 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 25.42 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 27.49 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 24.81 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 17.77 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 20.58 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 13.32 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 19.49 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 14.03 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 15.51 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 14.65 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 10.88 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 16.75 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 12.27 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 20.20 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 18.46 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 15.30 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 15.10 | HC |