| SRR4457251 | 2nd_leaf | DAH4 | 4.10 | HC |
| SRR358795 | callus | wt | 10.63 | HC |
| SRR5560727 | caryopsis | wild_type | 21.89 | HC |
| SRR5560728 | caryopsis | wild_type | 20.11 | HC |
| SRR5560729 | caryopsis | wild_type | 27.25 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 21.07 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 15.66 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 14.39 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 11.15 | HC |
| SRR7265400 | coleoptile | 2dA | 8.28 | HC |
| SRR7265401 | coleoptile | 2dA | 7.21 | HC |
| SRR7265402 | coleoptile | 2dA | 8.94 | HC |
| SRR7265403 | coleoptile | 2dN | 15.99 | HC |
| SRR7265404 | coleoptile | 2dN | 14.66 | HC |
| SRR7265405 | coleoptile | 2dN | 16.25 | HC |
| SRR7265406 | coleoptile | 3dA | 7.40 | HC |
| SRR7265407 | coleoptile | 3dA | 6.08 | HC |
| SRR7265408 | coleoptile | 3dA | 4.34 | HC |
| SRR7265409 | coleoptile | 3dN | 9.62 | HC |
| SRR7265410 | coleoptile | 3dN | 10.46 | HC |
| SRR7265411 | coleoptile | 3dN | 11.47 | HC |
| SRR7265415 | coleoptile | 4dN | 9.41 | HC |
| SRR7265416 | coleoptile | 4dN | 10.48 | HC |
| SRR7265417 | coleoptile | 4dN | 10.93 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 5.62 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 62.94 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 91.29 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 84.63 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 72.70 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 81.42 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 45.89 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 20.37 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 77.88 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 116.81 | HC |
| SRR7265388 | embryo | 12hA | 8.09 | HC |
| SRR7265389 | embryo | 12hA | 7.13 | HC |
| SRR7265390 | embryo | 12hA | 9.55 | HC |
| SRR7265391 | embryo | 12hN | 6.95 | HC |
| SRR7265392 | embryo | 12hN | 12.70 | HC |
| SRR7265393 | embryo | 12hN | 13.62 | HC |
| SRR7265394 | embryo | 24hA | 8.53 | HC |
| SRR7265395 | embryo | 24hA | 9.72 | HC |
| SRR7265396 | embryo | 24hA | 11.62 | HC |
| SRR7265397 | embryo | 24hN | 10.64 | HC |
| SRR7265398 | embryo | 24hN | 15.36 | HC |
| SRR7265399 | embryo | 24hN | 11.72 | HC |
| SRR2338869 | endosprem | high_temperature | 11.23 | HC |
| SRR1213690 | flower | wt(flower buds) | 9.29 | HC |
| SRR1213691 | flower | wt | 10.81 | HC |
| SRR8060835 | leaf | wild_type | 28.84 | HC |
| SRR8060836 | leaf | wild_type | 10.47 | HC |
| SRR8060837 | leaf | wild_type | 26.52 | HC |
| SRR8240824 | leaf | wild_type | 3.66 | HC |
| SRR8240818 | leaf | wild_type | 2.92 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 20.33 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 14.02 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 13.57 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 12.08 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 16.03 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 13.85 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.62 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 11.00 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.60 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 11.80 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 13.06 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.42 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.08 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 11.73 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 9.91 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 12.66 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 16.17 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 27.23 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.92 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 11.50 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 11.39 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.88 | HC |
| SRR504365 | leaf | wt | 4.37 | HC |
| SRR8611900 | leaf | Non-inoculated | 22.62 | HC |
| SRR8611901 | leaf | Non-inoculated | 22.25 | HC |
| SRR8611902 | leaf | Non-inoculated | 20.18 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 11.02 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 12.72 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 12.39 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 18.29 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 23.84 | HC |
| SRR1213692 | leaf | wt | 6.94 | HC |
| SRR1213693 | leaf | wt | 5.57 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 6.87 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 6.49 | HC |
| SRR6502090 | leaf | control | 6.35 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 7.01 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 7.69 | HC |
| SRR6502100 | leaf | control | 8.56 | HC |
| SRR6502101 | leaf | control | 4.74 | HC |
| SRR5856927 | leaf | control | 16.57 | HC |
| SRR5856928 | leaf | control | 19.21 | HC |
| SRR5856929 | leaf | control | 23.69 | HC |
| SRR5856930 | leaf | salt | 15.20 | HC |
| SRR5856931 | leaf | salt | 14.14 | HC |
| SRR5856932 | leaf | salt | 15.31 | HC |
| SRR5856933 | leaf | control | 28.10 | HC |
| SRR5856934 | leaf | control | 23.72 | HC |
| SRR5856935 | leaf | control | 25.06 | HC |
| SRR5856936 | leaf | salt | 13.71 | HC |
| SRR5856937 | leaf | salt | 12.47 | HC |
| SRR5856938 | leaf | salt | 17.89 | HC |
| SRR6168973 | leaf | none (control) | 116.93 | HC |
| SRR6168974 | leaf | none (control) | 114.32 | HC |
| SRR6168975 | leaf | none (control) | 75.21 | HC |
| SRR6168979 | leaf | none (control) | 2.68 | HC |
| SRR6168980 | leaf | none (control) | 3.61 | HC |
| SRR6168981 | leaf | none (control) | 17.07 | HC |
| SRR8582891 | panicle | PM | 12.14 | HC |
| SRR8582893 | panicle | PM | 12.89 | HC |
| SRR4947496 | root | control | 38.05 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 5.17 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 4.21 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.21 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 3.95 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 8.86 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 8.35 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 18.79 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 29.53 | HC |
| SRR5126147 | root | "mock,1_day" | 22.48 | HC |
| SRR5126148 | root | "mock,1_day" | 29.51 | HC |
| SRR5126149 | root | "mock,1_day" | 20.04 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 12.28 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 13.20 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 14.56 | HC |
| SRR5126153 | root | "mock,7_days" | 12.37 | HC |
| SRR5126155 | root | "mock,7_days" | 15.87 | HC |
| SRR5126157 | root | "mock,7_days" | 12.16 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 13.16 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 8.42 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 16.82 | HC |
| SRR5126165 | root | "mock,14_days" | 8.21 | HC |
| SRR5126167 | root | "mock,14_days" | 7.47 | HC |
| SRR5126169 | root | "mock,14_days" | 18.74 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 14.67 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 9.22 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 8.74 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 18.29 | HC |
| SRR1213694 | root | wt | 8.92 | HC |
| SRR1213695 | root | wt | 4.42 | HC |
| SRR4947480 | root | control | 27.69 | HC |
| SRR4947481 | root | control | 30.65 | HC |
| SRR4947484 | root | Al | 29.63 | HC |
| SRR4947485 | root | Al | 34.72 | HC |
| SRR4947488 | root | control | 41.15 | HC |
| SRR4947489 | root | control | 39.43 | HC |
| SRR4947492 | root | Al | 27.75 | HC |
| SRR4947493 | root | Al | 31.96 | HC |
| SRR4947497 | root | control | 37.57 | HC |
| SRR4947500 | root | Al | 31.78 | HC |
| SRR4947501 | root | Al | 30.40 | HC |
| SRR4947504 | root | control | 32.47 | HC |
| SRR4947505 | root | control | 34.88 | HC |
| SRR4947508 | root | Al | 32.65 | HC |
| SRR4947509 | root | Al | 18.21 | HC |
| SRR6502091 | root | 100 mM NaCl | 34.83 | HC |
| SRR6502092 | root | 100 mM NaCl | 52.37 | HC |
| SRR6502093 | root | 100 mM NaCl | 37.10 | HC |
| SRR6502094 | root | control | 55.37 | HC |
| SRR6502095 | root | control | 45.16 | HC |
| SRR6502096 | root | control | 39.17 | HC |
| SRR6502103 | root | 100 mM NaCl | 38.39 | HC |
| SRR6502104 | root | 100 mM NaCl | 34.32 | HC |
| SRR6502105 | root | 100 mM NaCl | 55.52 | HC |
| SRR6502106 | root | control | 39.17 | HC |
| SRR6502107 | root | control | 31.39 | HC |
| SRR6502108 | root | control | 45.43 | HC |
| SRR1740434 | root_differentiation_zone | wt | 21.72 | HC |
| SRR1740435 | root_differentiation_zone | wt | 26.48 | HC |
| SRR1740436 | root_differentiation_zone | wt | 30.33 | HC |
| SRR1740431 | root_elongation_zone | wt | 48.47 | HC |
| SRR1740432 | root_elongation_zone | wt | 46.33 | HC |
| SRR1740433 | root_elongation_zone | wt | 64.61 | HC |
| SRR1740428 | root_meristematic_zone | wt | 47.76 | HC |
| SRR1740429 | root_meristematic_zone | wt | 42.66 | HC |
| SRR1740430 | root_meristematic_zone | wt | 53.43 | HC |
| SRR6441554 | seedling | wild_type | 13.67 | HC |
| SRR6441555 | seedling | wild_type | 13.14 | HC |
| SRR2154086 | seedling | wt | 6.75 | HC |
| SRR2154085 | seedling | wt | 7.85 | HC |
| SRR2154087 | seedling | wt | 8.91 | HC |
| SRR3098741 | seedling | wt | 3.37 | HC |
| SRR3098742 | seedling | wt | 6.14 | HC |
| SRR3098743 | seedling | wt | 4.17 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.81 | HC |
| SRR2857720 | seedling | drought_stress_1h | 6.65 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 5.58 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 4.48 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.41 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.50 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.27 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 7.30 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 8.18 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.22 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.84 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 6.80 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.77 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.81 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.94 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.40 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.23 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 7.57 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.97 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 49.76 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 60.25 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 58.11 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 25.82 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 57.42 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 37.68 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 25.80 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 45.65 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 34.86 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 50.46 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 62.61 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 42.26 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 35.33 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 38.52 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 46.64 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 27.77 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 36.25 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 37.99 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 35.90 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 44.05 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 30.07 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 29.60 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 26.61 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 9.48 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 13.90 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 12.45 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 25.97 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 27.22 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 25.35 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 29.92 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 25.75 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 23.03 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 22.01 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 20.43 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 23.41 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 20.56 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 28.59 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 25.77 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 21.32 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 10.21 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 12.41 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 14.26 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 15.92 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 17.46 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 18.98 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 12.99 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 18.85 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 14.57 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 17.61 | HC |