| SRR5560727 | caryopsis | wild_type | 9.40 | HC |
| SRR5560728 | caryopsis | wild_type | 12.04 | HC |
| SRR5560729 | caryopsis | wild_type | 16.17 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 12.50 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 12.12 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 5.10 | HC |
| SRR4947495 | root | control | 5.62 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 9.35 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 5.31 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.65 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 6.53 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 8.73 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 5.55 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 6.02 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 5.00 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 9.45 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 7.62 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 8.06 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 9.55 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.76 | HC |
| SRR1213691 | flower | wt | 8.16 | HC |
| SRR8060836 | leaf | wild_type | 3.72 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 5.06 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 4.20 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 4.65 | HC |
| SRR4947496 | root | control | 5.35 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 6.01 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 7.01 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.62 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 8.35 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 16.77 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 14.19 | HC |
| SRR5126147 | root | "mock,1_day" | 5.25 | HC |
| SRR5126148 | root | "mock,1_day" | 4.12 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 9.37 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 11.68 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 11.45 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 6.26 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 7.64 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 9.27 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.09 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 6.10 | HC |
| SRR4947478 | root | control | 4.86 | HC |
| SRR4947479 | root | control | 5.30 | HC |
| SRR4947480 | root | control | 5.52 | HC |
| SRR4947481 | root | control | 5.92 | HC |
| SRR4947483 | root | Al | 4.26 | HC |
| SRR4947487 | root | control | 5.65 | HC |
| SRR4947488 | root | control | 5.92 | HC |
| SRR4947489 | root | control | 5.60 | HC |
| SRR4947491 | root | Al | 5.48 | HC |
| SRR4947492 | root | Al | 6.06 | HC |
| SRR4947493 | root | Al | 5.15 | HC |
| SRR4947494 | root | control | 5.09 | HC |
| SRR4947503 | root | control | 7.68 | HC |
| SRR4947505 | root | control | 8.20 | HC |
| SRR4947506 | root | Al | 4.96 | HC |
| SRR4947507 | root | Al | 6.94 | HC |
| SRR4947508 | root | Al | 5.69 | HC |
| SRR6502091 | root | 100 mM NaCl | 7.27 | HC |
| SRR6502092 | root | 100 mM NaCl | 8.12 | HC |
| SRR6502093 | root | 100 mM NaCl | 9.56 | HC |
| SRR6502094 | root | control | 6.81 | HC |
| SRR6502095 | root | control | 6.54 | HC |
| SRR6502096 | root | control | 5.23 | HC |
| SRR6502103 | root | 100 mM NaCl | 6.23 | HC |
| SRR6502104 | root | 100 mM NaCl | 7.03 | HC |
| SRR6502105 | root | 100 mM NaCl | 8.82 | HC |
| SRR6502106 | root | control | 6.02 | HC |
| SRR6502107 | root | control | 6.02 | HC |
| SRR6502108 | root | control | 6.63 | HC |
| SRR1740434 | root_differentiation_zone | wt | 3.48 | HC |
| SRR1740436 | root_differentiation_zone | wt | 3.19 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 11.88 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 10.95 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 10.55 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 13.25 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 9.20 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 11.00 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 8.76 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 8.76 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 9.86 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 13.67 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 15.08 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 19.04 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 13.80 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 14.15 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 14.61 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 18.56 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 18.91 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 14.13 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 17.90 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 17.79 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.95 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 5.22 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.77 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 5.95 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.74 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.37 | HC |