| SRR358795 | callus | wt | 13.16 | HC |
| SRR358797 | callus | wt | 12.95 | HC |
| SRR358798 | callus | wt | 12.87 | HC |
| SRR5560727 | caryopsis | wild_type | 14.96 | HC |
| SRR5560728 | caryopsis | wild_type | 30.30 | HC |
| SRR5560729 | caryopsis | wild_type | 42.53 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 31.50 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 30.04 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 13.74 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 32.47 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 13.90 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 14.13 | HC |
| SRR2338867 | endosprem | control | 2.63 | HC |
| SRR1213690 | flower | wt(flower buds) | 14.21 | HC |
| SRR1213691 | flower | wt | 16.07 | HC |
| SRR8240819 | leaf | wild_type | 2.41 | HC |
| SRR8240820 | leaf | wild_type | 2.89 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 20.43 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 17.24 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 13.13 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 14.79 | HC |
| SRR504365 | leaf | wt | 4.30 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 4.96 | HC |
| SRR8611900 | leaf | Non-inoculated | 5.47 | HC |
| SRR8611901 | leaf | Non-inoculated | 5.94 | HC |
| SRR8611902 | leaf | Non-inoculated | 6.67 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 7.24 | HC |
| SRR5126149 | root | "mock,1_day" | 5.09 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 13.68 | HC |
| SRR5126165 | root | "mock,14_days" | 5.20 | HC |
| SRR6441554 | seedling | wild_type | 7.68 | HC |
| SRR6441555 | seedling | wild_type | 4.58 | HC |
| SRR2154086 | seedling | wt | 17.23 | HC |
| SRR3098741 | seedling | wt | 7.41 | HC |
| SRR3098742 | seedling | wt | 8.47 | HC |
| SRR3098743 | seedling | wt | 3.08 | HC |
| SRR2857719 | seedling | drought_stress_0h | 11.74 | HC |
| SRR2857720 | seedling | drought_stress_1h | 14.79 | HC |
| SRR1944583 | seedling | no_treatment | 6.06 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 6.13 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 14.10 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 14.16 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.46 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.67 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 7.95 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.23 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 11.80 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 5.93 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 6.43 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.13 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.73 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.78 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.95 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 9.07 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 8.07 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 8.81 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 9.31 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.37 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.93 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.35 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.16 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 8.34 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 8.55 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 48.38 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 45.44 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 31.04 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 96.70 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 38.73 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 51.95 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 87.75 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 40.62 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 63.49 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 64.85 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 44.69 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 65.78 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 97.89 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 79.48 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 86.82 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 96.53 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 103.22 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 98.87 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 106.16 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 91.37 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 93.71 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 113.56 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 128.22 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 8.14 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 9.30 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 29.09 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 27.28 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 23.72 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 27.23 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 23.87 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 27.56 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 34.24 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 43.00 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 39.36 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 33.88 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 28.75 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 35.17 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 44.58 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 42.60 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 40.99 | HC |