| SRR358795 | callus | wt | 10.95 | HC |
| SRR358796 | callus | wt | 10.91 | HC |
| SRR358797 | callus | wt | 11.66 | HC |
| SRR358798 | callus | wt | 11.28 | HC |
| SRR5560727 | caryopsis | wild_type | 6.66 | HC |
| SRR5560728 | caryopsis | wild_type | 7.44 | HC |
| SRR5560729 | caryopsis | wild_type | 16.20 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 5.86 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 5.52 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 4.31 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 5.51 | HC |
| SRR7265400 | coleoptile | 2dA | 4.70 | HC |
| SRR7265402 | coleoptile | 2dA | 4.07 | HC |
| SRR7265403 | coleoptile | 2dN | 7.75 | HC |
| SRR7265404 | coleoptile | 2dN | 8.22 | HC |
| SRR7265405 | coleoptile | 2dN | 8.33 | HC |
| SRR7265407 | coleoptile | 3dA | 3.41 | HC |
| SRR7265409 | coleoptile | 3dN | 7.32 | HC |
| SRR7265410 | coleoptile | 3dN | 6.47 | HC |
| SRR7265411 | coleoptile | 3dN | 7.85 | HC |
| SRR7265415 | coleoptile | 4dN | 8.83 | HC |
| SRR7265416 | coleoptile | 4dN | 6.75 | HC |
| SRR7265417 | coleoptile | 4dN | 6.84 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 4.34 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 6.14 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 5.93 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 5.38 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 10.02 | HC |
| SRR7265374 | embryo | dry seed 0 h | 6.46 | HC |
| SRR7265376 | embryo | 1hA | 3.91 | HC |
| SRR7265377 | embryo | 1hA | 6.28 | HC |
| SRR7265378 | embryo | 1hA | 6.07 | HC |
| SRR7265379 | embryo | 1hN | 5.23 | HC |
| SRR7265380 | embryo | 1hN | 5.79 | HC |
| SRR7265381 | embryo | 1hN | 5.94 | HC |
| SRR7265383 | embryo | 3hA | 4.96 | HC |
| SRR7265385 | embryo | 3hN | 4.59 | HC |
| SRR7265387 | embryo | 3hN | 6.50 | HC |
| SRR7265388 | embryo | 12hA | 5.07 | HC |
| SRR7265389 | embryo | 12hA | 7.87 | HC |
| SRR7265390 | embryo | 12hA | 7.15 | HC |
| SRR7265391 | embryo | 12hN | 9.16 | HC |
| SRR7265392 | embryo | 12hN | 6.98 | HC |
| SRR7265393 | embryo | 12hN | 7.01 | HC |
| SRR7265394 | embryo | 24hA | 5.50 | HC |
| SRR7265395 | embryo | 24hA | 7.38 | HC |
| SRR7265396 | embryo | 24hA | 5.77 | HC |
| SRR7265397 | embryo | 24hN | 9.44 | HC |
| SRR7265398 | embryo | 24hN | 8.74 | HC |
| SRR7265399 | embryo | 24hN | 7.74 | HC |
| SRR2338866 | endosprem | control | 14.71 | HC |
| SRR2338867 | endosprem | control | 6.43 | HC |
| SRR2338868 | endosprem | high_temperature | 7.88 | HC |
| SRR2338869 | endosprem | high_temperature | 8.67 | HC |
| SRR976168 | flag_leaf | wild_type | 7.33 | HC |
| SRR1213690 | flower | wt(flower buds) | 9.65 | HC |
| SRR1213691 | flower | wt | 10.60 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.58 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 5.10 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 5.21 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.48 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.83 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.16 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.18 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.82 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.01 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.29 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.95 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.32 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.37 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.58 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.49 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.94 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.60 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 7.20 | HC |
| SRR6168973 | leaf | none (control) | 6.98 | HC |
| SRR6168974 | leaf | none (control) | 9.67 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 12.56 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 4.49 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 11.78 | HC |
| SRR6168979 | leaf | none (control) | 2.58 | HC |
| SRR6168980 | leaf | none (control) | 2.11 | HC |
| SRR6168981 | leaf | none (control) | 6.53 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 3.35 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 17.12 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 4.01 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 4.81 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 5.12 | HC |
| SRR1633182 | panicle | WT | 6.35 | HC |
| SRR1633185 | panicle | WT | 7.15 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 6.27 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.23 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 19.80 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 19.27 | HC |
| SRR5126147 | root | "mock,1_day" | 6.86 | HC |
| SRR5126148 | root | "mock,1_day" | 6.06 | HC |
| SRR5126149 | root | "mock,1_day" | 6.31 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 5.94 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 6.84 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 7.44 | HC |
| SRR5126153 | root | "mock,7_days" | 7.09 | HC |
| SRR5126155 | root | "mock,7_days" | 5.29 | HC |
| SRR5126157 | root | "mock,7_days" | 8.37 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 9.58 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 10.15 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 9.65 | HC |
| SRR5126165 | root | "mock,14_days" | 6.65 | HC |
| SRR5126167 | root | "mock,14_days" | 4.71 | HC |
| SRR5126169 | root | "mock,14_days" | 6.56 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 9.44 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 10.07 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 16.58 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.25 | HC |
| SRR4947489 | root | control | 5.60 | HC |
| SRR4947493 | root | Al | 5.00 | HC |
| SRR4947497 | root | control | 7.92 | HC |
| SRR4947500 | root | Al | 7.43 | HC |
| SRR4947501 | root | Al | 8.44 | HC |
| SRR4947505 | root | control | 7.87 | HC |
| SRR4947508 | root | Al | 5.28 | HC |
| SRR4947509 | root | Al | 8.08 | HC |
| SRR1740432 | root_elongation_zone | wt | 7.99 | HC |
| SRR1740433 | root_elongation_zone | wt | 6.60 | HC |
| SRR1740429 | root_meristematic_zone | wt | 5.63 | HC |
| SRR1740430 | root_meristematic_zone | wt | 5.43 | HC |
| SRR2154086 | seedling | wt | 7.86 | HC |
| SRR2154085 | seedling | wt | 5.61 | HC |
| SRR2154087 | seedling | wt | 6.49 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.15 | HC |
| SRR2857720 | seedling | drought_stress_1h | 4.32 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.96 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.08 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.03 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.58 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.97 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.42 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.66 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.93 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.65 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.20 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.71 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 34.13 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 32.41 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 29.98 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 52.54 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 36.66 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 50.97 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 36.29 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 37.75 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 32.86 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 27.63 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 22.46 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 23.41 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 41.67 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 42.71 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 43.04 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 44.89 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 44.72 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 48.40 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 45.40 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 38.86 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 34.81 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 44.45 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 63.42 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 8.91 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 8.29 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 10.30 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 9.19 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 21.00 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 19.19 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 21.22 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 19.13 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 15.78 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 17.00 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 11.03 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 13.39 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 11.57 | HC |