| SRR4457258 | 2nd_leaf | DAH28 | 7.53 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 6.81 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 5.56 | HC |
| SRR358795 | callus | wt | 46.98 | HC |
| SRR358796 | callus | wt | 46.79 | HC |
| SRR358797 | callus | wt | 42.78 | HC |
| SRR358798 | callus | wt | 42.32 | HC |
| SRR6320473 | carpel | wt | 22.51 | HC |
| SRR6320498 | carpel | wt | 30.28 | HC |
| SRR5560727 | caryopsis | wild_type | 58.56 | HC |
| SRR5560728 | caryopsis | wild_type | 62.27 | HC |
| SRR5560729 | caryopsis | wild_type | 33.31 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 33.37 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 25.20 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 25.24 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 12.08 | HC |
| SRR7265402 | coleoptile | 2dA | 4.21 | HC |
| SRR7265390 | embryo | 12hA | 5.28 | HC |
| SRR2338866 | endosprem | control | 10.17 | HC |
| SRR2338867 | endosprem | control | 6.42 | HC |
| SRR2338868 | endosprem | high_temperature | 15.71 | HC |
| SRR2338869 | endosprem | high_temperature | 16.53 | HC |
| SRR4457235 | flag_leaf | DAH12 | 3.90 | HC |
| SRR4457237 | flag_leaf | DAH20 | 4.87 | HC |
| SRR4457238 | flag_leaf | DAH20 | 5.58 | HC |
| SRR4457239 | flag_leaf | DAH20 | 5.13 | HC |
| SRR4457240 | flag_leaf | DAH28 | 10.10 | HC |
| SRR4457241 | flag_leaf | DAH28 | 7.64 | HC |
| SRR4457242 | flag_leaf | DAH28 | 7.05 | HC |
| SRR4457246 | flag_leaf | DAH44 | 4.80 | HC |
| SRR4457247 | flag_leaf | DAH44 | 8.81 | HC |
| SRR4457248 | flag_leaf | DAH44 | 7.36 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.28 | HC |
| SRR8060836 | leaf | wild_type | 6.70 | HC |
| SRR8060837 | leaf | wild_type | 4.26 | HC |
| SRR8240824 | leaf | wild_type | 5.47 | HC |
| SRR8240825 | leaf | wild_type | 7.74 | HC |
| SRR8240826 | leaf | wild_type | 2.53 | HC |
| SRR8240818 | leaf | wild_type | 2.14 | HC |
| SRR8240819 | leaf | wild_type | 11.08 | HC |
| SRR8240820 | leaf | wild_type | 5.63 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 5.15 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 22.44 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 12.78 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 13.62 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 17.26 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 16.02 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.20 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 12.02 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 18.18 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.61 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 9.14 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 9.54 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 16.83 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 9.04 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 15.79 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 10.68 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 23.95 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 14.79 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 15.89 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.24 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.30 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.00 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 12.53 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 12.48 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 15.08 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 14.18 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.77 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 11.00 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 11.82 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 11.80 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 11.62 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 14.24 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 85.82 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 107.34 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 85.82 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 107.34 | HC |
| SRR1761528 | leaf | drought | 85.82 | HC |
| SRR1761529 | leaf | drought | 107.34 | HC |
| SRR504365 | leaf | wt | 8.42 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 17.11 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 23.45 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 14.11 | HC |
| SRR6417967 | leaf | H2O_control | 4.66 | HC |
| SRR6417968 | leaf | H2O_control | 5.51 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 4.64 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 7.94 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 79.53 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 86.56 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 5.83 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 9.83 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 69.89 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 78.12 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 10.22 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 61.52 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 7.83 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 99.12 | HC |
| SRR8611900 | leaf | Non-inoculated | 17.49 | HC |
| SRR8611901 | leaf | Non-inoculated | 16.95 | HC |
| SRR8611902 | leaf | Non-inoculated | 17.35 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 43.36 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 45.46 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 45.12 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 4.24 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 4.70 | HC |
| SRR1213692 | leaf | wt | 12.45 | HC |
| SRR1213693 | leaf | wt | 10.11 | HC |
| SRR5856927 | leaf | control | 5.65 | HC |
| SRR5856928 | leaf | control | 5.93 | HC |
| SRR5856929 | leaf | control | 3.36 | HC |
| SRR5856930 | leaf | salt | 16.81 | HC |
| SRR5856931 | leaf | salt | 15.23 | HC |
| SRR5856932 | leaf | salt | 18.06 | HC |
| SRR5856933 | leaf | control | 4.36 | HC |
| SRR5856934 | leaf | control | 6.36 | HC |
| SRR5856935 | leaf | control | 6.91 | HC |
| SRR5856936 | leaf | salt | 16.25 | HC |
| SRR5856937 | leaf | salt | 14.86 | HC |
| SRR5856938 | leaf | salt | 13.44 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 11.97 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 17.81 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 39.23 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 29.20 | HC |
| SRR6168973 | leaf | none (control) | 14.43 | HC |
| SRR6168974 | leaf | none (control) | 17.73 | HC |
| SRR6168975 | leaf | none (control) | 18.62 | HC |
| SRR6168979 | leaf | none (control) | 85.64 | HC |
| SRR6168980 | leaf | none (control) | 82.81 | HC |
| SRR6168981 | leaf | none (control) | 66.05 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 56.58 | HC |
| SRR8582889 | panicle | AM | 2.43 | HC |
| SRR8582891 | panicle | PM | 11.29 | HC |
| SRR8582892 | panicle | PM | 8.38 | HC |
| SRR8582893 | panicle | PM | 15.63 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 7.41 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 48.07 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 81.47 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 72.14 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 27.43 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 29.67 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 8.82 | HC |
| SRR5126147 | root | "mock,1_day" | 8.24 | HC |
| SRR5126148 | root | "mock,1_day" | 5.83 | HC |
| SRR5126149 | root | "mock,1_day" | 6.39 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 12.09 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 13.41 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 13.85 | HC |
| SRR5126155 | root | "mock,7_days" | 4.80 | HC |
| SRR5126157 | root | "mock,7_days" | 13.64 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 28.38 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 40.99 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 26.23 | HC |
| SRR5126165 | root | "mock,14_days" | 7.07 | HC |
| SRR5126167 | root | "mock,14_days" | 13.80 | HC |
| SRR5126169 | root | "mock,14_days" | 5.51 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 58.26 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 24.65 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 57.26 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 5.21 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 3.07 | HC |
| SRR1213695 | root | wt | 13.97 | HC |
| SRR6502093 | root | 100 mM NaCl | 6.05 | HC |
| SRR6502094 | root | control | 6.12 | HC |
| SRR6502095 | root | control | 7.06 | HC |
| SRR6502096 | root | control | 5.33 | HC |
| SRR6502103 | root | 100 mM NaCl | 8.96 | HC |
| SRR6502104 | root | 100 mM NaCl | 7.14 | HC |
| SRR6502105 | root | 100 mM NaCl | 6.77 | HC |
| SRR6502106 | root | control | 6.16 | HC |
| SRR6502107 | root | control | 7.20 | HC |
| SRR6502108 | root | control | 8.88 | HC |
| SRR1740434 | root_differentiation_zone | wt | 11.08 | HC |
| SRR1740435 | root_differentiation_zone | wt | 22.72 | HC |
| SRR1740436 | root_differentiation_zone | wt | 26.45 | HC |
| SRR1740431 | root_elongation_zone | wt | 50.13 | HC |
| SRR1740432 | root_elongation_zone | wt | 33.29 | HC |
| SRR1740433 | root_elongation_zone | wt | 43.13 | HC |
| SRR1740428 | root_meristematic_zone | wt | 41.06 | HC |
| SRR1740429 | root_meristematic_zone | wt | 13.89 | HC |
| SRR1740430 | root_meristematic_zone | wt | 22.34 | HC |
| SRR6441555 | seedling | wild_type | 5.09 | HC |
| SRR2154086 | seedling | wt | 6.03 | HC |
| SRR2154087 | seedling | wt | 12.73 | HC |
| SRR3098741 | seedling | wt | 13.28 | HC |
| SRR3098742 | seedling | wt | 7.90 | HC |
| SRR3098743 | seedling | wt | 6.17 | HC |
| SRR2857719 | seedling | drought_stress_0h | 6.22 | HC |
| SRR2857720 | seedling | drought_stress_1h | 7.47 | HC |
| SRR2857721 | seedling | drought_stress_6h | 74.78 | HC |
| SRR358791 | seedling | wt | 9.22 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 5.74 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 7.34 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 8.61 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 13.01 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 18.69 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 14.81 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 14.29 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 10.27 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.84 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.95 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 15.75 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 16.39 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 12.79 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 18.02 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 13.38 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 30.27 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 34.26 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 12.36 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 11.72 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 13.98 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 13.94 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 27.75 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.52 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.59 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.95 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.17 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.25 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.08 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.38 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 6.48 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 7.26 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 32.37 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 34.25 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 49.11 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 19.27 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 37.40 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 33.06 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 20.92 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 36.04 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 18.81 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 26.15 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 34.38 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 17.80 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 33.18 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 21.20 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 20.40 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 40.52 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 33.52 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 21.93 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 23.43 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 41.51 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 22.85 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 27.22 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 10.39 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 12.23 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 14.33 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 12.89 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 12.27 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 12.88 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 10.46 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 9.19 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 29.65 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 22.22 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 23.96 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 12.71 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 8.74 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 8.28 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 7.94 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 5.88 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 7.77 | HC |