| SRR4457249 | 2nd_leaf | DAH4 | 10.27 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 7.64 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 9.12 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 9.93 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 8.68 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 10.89 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 8.11 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 9.29 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 9.19 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 8.64 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 8.99 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 7.19 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 6.13 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 11.82 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 5.85 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 7.49 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 15.12 | HC |
| SRR3745125 | anther | wt | 43.96 | HC |
| SRR3745126 | anther | wt | 21.40 | HC |
| SRR3745127 | anther | wt | 30.42 | HC |
| SRR358796 | callus | wt | 9.64 | HC |
| SRR5560727 | caryopsis | wild_type | 16.57 | HC |
| SRR5560728 | caryopsis | wild_type | 13.61 | HC |
| SRR5560729 | caryopsis | wild_type | 17.89 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 7.38 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 5.60 | HC |
| SRR7265411 | coleoptile | 3dN | 3.67 | HC |
| SRR7265412 | coleoptile | 4dA | 3.91 | HC |
| SRR7265414 | coleoptile | 4dA | 4.32 | HC |
| SRR7265417 | coleoptile | 4dN | 4.23 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 15.80 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 17.53 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 14.44 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 17.32 | HC |
| SRR7265375 | embryo | dry seed 0 h | 2.14 | HC |
| SRR7265378 | embryo | 1hA | 4.23 | HC |
| SRR7265386 | embryo | 3hN | 4.53 | HC |
| SRR7265387 | embryo | 3hN | 4.06 | HC |
| SRR7265392 | embryo | 12hN | 5.43 | HC |
| SRR2338868 | endosprem | high_temperature | 6.47 | HC |
| SRR4457231 | flag_leaf | DAH4 | 7.77 | HC |
| SRR4457232 | flag_leaf | DAH4 | 8.05 | HC |
| SRR4457233 | flag_leaf | DAH4 | 8.22 | HC |
| SRR4457234 | flag_leaf | DAH12 | 6.95 | HC |
| SRR4457235 | flag_leaf | DAH12 | 17.52 | HC |
| SRR4457236 | flag_leaf | DAH12 | 20.12 | HC |
| SRR4457237 | flag_leaf | DAH20 | 16.81 | HC |
| SRR4457238 | flag_leaf | DAH20 | 12.81 | HC |
| SRR4457239 | flag_leaf | DAH20 | 18.16 | HC |
| SRR4457240 | flag_leaf | DAH28 | 16.54 | HC |
| SRR4457241 | flag_leaf | DAH28 | 11.59 | HC |
| SRR4457242 | flag_leaf | DAH28 | 6.72 | HC |
| SRR4457243 | flag_leaf | DAH36 | 9.46 | HC |
| SRR4457245 | flag_leaf | DAH36 | 10.91 | HC |
| SRR4457246 | flag_leaf | DAH44 | 6.79 | HC |
| SRR4457248 | flag_leaf | DAH44 | 7.11 | HC |
| SRR1213690 | flower | wt(flower buds) | 7.96 | HC |
| SRR1213691 | flower | wt | 9.86 | HC |
| SRR8240824 | leaf | wild_type | 8.47 | HC |
| SRR8240826 | leaf | wild_type | 3.47 | HC |
| SRR8240818 | leaf | wild_type | 2.85 | HC |
| SRR8240820 | leaf | wild_type | 4.46 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.24 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 5.44 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.67 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.98 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.86 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 6.93 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 6.93 | HC |
| SRR1761530 | leaf | control | 6.93 | HC |
| SRR504365 | leaf | wt | 4.33 | HC |
| SRR6417968 | leaf | H2O_control | 5.40 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 10.73 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 10.83 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 8.59 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 10.19 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 7.89 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 6.47 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 11.96 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 9.43 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 11.96 | HC |
| SRR8611900 | leaf | Non-inoculated | 10.66 | HC |
| SRR8611901 | leaf | Non-inoculated | 11.34 | HC |
| SRR8611902 | leaf | Non-inoculated | 12.53 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 13.57 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 11.04 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 14.88 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 10.02 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 9.19 | HC |
| SRR1213692 | leaf | wt | 5.20 | HC |
| SRR1213693 | leaf | wt | 5.69 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 12.39 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 6.01 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 5.27 | HC |
| SRR6502088 | leaf | control | 5.49 | HC |
| SRR6502089 | leaf | control | 6.62 | HC |
| SRR6502090 | leaf | control | 5.51 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 5.97 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 7.72 | HC |
| SRR6502100 | leaf | control | 5.02 | HC |
| SRR6502101 | leaf | control | 8.12 | HC |
| SRR6502102 | leaf | control | 6.83 | HC |
| SRR6168973 | leaf | none (control) | 6.57 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 7.06 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 3.43 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 4.09 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.75 | HC |
| SRR4947496 | root | control | 9.06 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.91 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 6.24 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 5.64 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 4.57 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 9.89 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 8.70 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 19.05 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 31.07 | HC |
| SRR5126147 | root | "mock,1_day" | 10.57 | HC |
| SRR5126148 | root | "mock,1_day" | 11.99 | HC |
| SRR5126149 | root | "mock,1_day" | 17.25 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 14.31 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 12.97 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 9.07 | HC |
| SRR5126153 | root | "mock,7_days" | 11.58 | HC |
| SRR5126155 | root | "mock,7_days" | 13.20 | HC |
| SRR5126157 | root | "mock,7_days" | 17.26 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 12.27 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 11.76 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 16.24 | HC |
| SRR5126165 | root | "mock,14_days" | 13.37 | HC |
| SRR5126167 | root | "mock,14_days" | 11.02 | HC |
| SRR5126169 | root | "mock,14_days" | 14.07 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 11.44 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 17.15 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 12.50 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 13.03 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 15.28 | HC |
| SRR1213694 | root | wt | 4.78 | HC |
| SRR1213695 | root | wt | 6.01 | HC |
| SRR4947480 | root | control | 6.13 | HC |
| SRR4947481 | root | control | 6.21 | HC |
| SRR4947484 | root | Al | 6.69 | HC |
| SRR4947485 | root | Al | 6.01 | HC |
| SRR4947488 | root | control | 6.24 | HC |
| SRR4947489 | root | control | 6.51 | HC |
| SRR4947492 | root | Al | 6.55 | HC |
| SRR4947493 | root | Al | 9.88 | HC |
| SRR4947500 | root | Al | 7.05 | HC |
| SRR4947505 | root | control | 6.08 | HC |
| SRR4947508 | root | Al | 9.42 | HC |
| SRR6502091 | root | 100 mM NaCl | 18.67 | HC |
| SRR6502093 | root | 100 mM NaCl | 19.35 | HC |
| SRR6502094 | root | control | 24.04 | HC |
| SRR6502095 | root | control | 18.76 | HC |
| SRR6502096 | root | control | 17.51 | HC |
| SRR6502103 | root | 100 mM NaCl | 21.77 | HC |
| SRR6502105 | root | 100 mM NaCl | 28.17 | HC |
| SRR6502106 | root | control | 21.79 | HC |
| SRR6502107 | root | control | 16.18 | HC |
| SRR6502108 | root | control | 19.17 | HC |
| SRR1740434 | root_differentiation_zone | wt | 4.24 | HC |
| SRR1740435 | root_differentiation_zone | wt | 2.88 | HC |
| SRR1740431 | root_elongation_zone | wt | 4.83 | HC |
| SRR1740432 | root_elongation_zone | wt | 3.71 | HC |
| SRR6441554 | seedling | wild_type | 5.53 | HC |
| SRR6441555 | seedling | wild_type | 6.33 | HC |
| SRR2154085 | seedling | wt | 5.42 | HC |
| SRR2154087 | seedling | wt | 4.48 | HC |
| SRR3098741 | seedling | wt | 4.52 | HC |
| SRR3098742 | seedling | wt | 4.95 | HC |
| SRR3098743 | seedling | wt | 5.83 | HC |
| SRR2857719 | seedling | drought_stress_0h | 11.78 | HC |
| SRR2857720 | seedling | drought_stress_1h | 9.21 | HC |
| SRR2857721 | seedling | drought_stress_6h | 5.31 | HC |
| SRR1944583 | seedling | no_treatment | 5.75 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 7.44 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 7.43 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.85 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 14.49 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 13.78 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 8.71 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.99 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 11.85 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 7.97 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 8.41 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 8.82 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 6.68 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 10.16 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 12.45 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 6.87 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 14.30 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 16.28 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.01 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.93 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.31 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.48 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.01 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.83 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.80 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.56 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.29 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 8.70 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 3.62 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 4.86 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.90 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.13 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.79 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.43 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 7.37 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 9.15 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 8.59 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 8.65 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 8.49 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 9.35 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 8.22 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 8.94 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 8.71 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 10.56 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 12.23 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 10.36 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 11.16 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 13.77 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 15.73 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 15.33 | HC |