| SRR4457249 | 2nd_leaf | DAH4 | 107.82 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 81.31 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 84.20 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 74.07 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 76.33 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 62.65 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 60.81 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 51.65 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 57.91 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 46.18 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 38.69 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 33.81 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 98.51 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 85.63 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 52.53 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 36.51 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 27.23 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 43.73 | HC |
| SRR3745125 | anther | wt | 59.71 | HC |
| SRR3745126 | anther | wt | 49.48 | HC |
| SRR3745127 | anther | wt | 48.13 | HC |
| SRR358795 | callus | wt | 35.24 | HC |
| SRR358796 | callus | wt | 34.11 | HC |
| SRR358797 | callus | wt | 33.23 | HC |
| SRR358798 | callus | wt | 38.81 | HC |
| SRR6320473 | carpel | wt | 53.54 | HC |
| SRR6320498 | carpel | wt | 55.14 | HC |
| SRR5560727 | caryopsis | wild_type | 131.15 | HC |
| SRR5560728 | caryopsis | wild_type | 110.04 | HC |
| SRR5560729 | caryopsis | wild_type | 85.38 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 60.18 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 51.15 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 30.24 | HC |
| SRR4947495 | root | control | 34.59 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 44.14 | HC |
| SRR7265400 | coleoptile | 2dA | 17.58 | HC |
| SRR7265401 | coleoptile | 2dA | 15.87 | HC |
| SRR7265402 | coleoptile | 2dA | 16.23 | HC |
| SRR7265403 | coleoptile | 2dN | 20.52 | HC |
| SRR7265404 | coleoptile | 2dN | 20.06 | HC |
| SRR7265405 | coleoptile | 2dN | 17.98 | HC |
| SRR7265406 | coleoptile | 3dA | 13.81 | HC |
| SRR7265407 | coleoptile | 3dA | 14.46 | HC |
| SRR7265408 | coleoptile | 3dA | 11.04 | HC |
| SRR7265409 | coleoptile | 3dN | 23.63 | HC |
| SRR7265410 | coleoptile | 3dN | 21.16 | HC |
| SRR7265411 | coleoptile | 3dN | 21.94 | HC |
| SRR7265412 | coleoptile | 4dA | 15.51 | HC |
| SRR7265413 | coleoptile | 4dA | 23.44 | HC |
| SRR7265414 | coleoptile | 4dA | 17.45 | HC |
| SRR7265415 | coleoptile | 4dN | 29.97 | HC |
| SRR7265416 | coleoptile | 4dN | 25.89 | HC |
| SRR7265417 | coleoptile | 4dN | 26.59 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 17.14 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 15.38 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 14.38 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 23.70 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 30.85 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 36.04 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 22.75 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 33.56 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 29.73 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 28.91 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 27.73 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 42.38 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 36.83 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 42.21 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 29.63 | HC |
| SRR7265373 | embryo | dry seed 0 h | 18.94 | HC |
| SRR7265374 | embryo | dry seed 0 h | 21.02 | HC |
| SRR7265375 | embryo | dry seed 0 h | 6.47 | HC |
| SRR7265376 | embryo | 1hA | 18.94 | HC |
| SRR7265377 | embryo | 1hA | 19.95 | HC |
| SRR7265378 | embryo | 1hA | 18.30 | HC |
| SRR7265379 | embryo | 1hN | 19.61 | HC |
| SRR7265380 | embryo | 1hN | 19.44 | HC |
| SRR7265381 | embryo | 1hN | 19.31 | HC |
| SRR7265382 | embryo | 3hA | 20.75 | HC |
| SRR7265383 | embryo | 3hA | 20.27 | HC |
| SRR7265384 | embryo | 3hA | 20.34 | HC |
| SRR7265385 | embryo | 3hN | 17.84 | HC |
| SRR7265386 | embryo | 3hN | 17.00 | HC |
| SRR7265387 | embryo | 3hN | 18.61 | HC |
| SRR7265388 | embryo | 12hA | 21.24 | HC |
| SRR7265389 | embryo | 12hA | 26.20 | HC |
| SRR7265390 | embryo | 12hA | 21.34 | HC |
| SRR7265391 | embryo | 12hN | 31.51 | HC |
| SRR7265392 | embryo | 12hN | 27.44 | HC |
| SRR7265393 | embryo | 12hN | 27.48 | HC |
| SRR7265394 | embryo | 24hA | 19.87 | HC |
| SRR7265395 | embryo | 24hA | 22.01 | HC |
| SRR7265396 | embryo | 24hA | 22.73 | HC |
| SRR7265397 | embryo | 24hN | 24.12 | HC |
| SRR7265398 | embryo | 24hN | 22.81 | HC |
| SRR7265399 | embryo | 24hN | 22.41 | HC |
| SRR2338866 | endosprem | control | 21.23 | HC |
| SRR2338867 | endosprem | control | 7.66 | HC |
| SRR2338868 | endosprem | high_temperature | 14.08 | HC |
| SRR2338869 | endosprem | high_temperature | 17.78 | HC |
| SRR976168 | flag_leaf | wild_type | 8.20 | HC |
| SRR4457231 | flag_leaf | DAH4 | 68.29 | HC |
| SRR4457232 | flag_leaf | DAH4 | 76.38 | HC |
| SRR4457233 | flag_leaf | DAH4 | 81.15 | HC |
| SRR4457234 | flag_leaf | DAH12 | 46.17 | HC |
| SRR4457235 | flag_leaf | DAH12 | 74.35 | HC |
| SRR4457236 | flag_leaf | DAH12 | 62.60 | HC |
| SRR4457237 | flag_leaf | DAH20 | 36.49 | HC |
| SRR4457238 | flag_leaf | DAH20 | 37.54 | HC |
| SRR4457239 | flag_leaf | DAH20 | 42.04 | HC |
| SRR4457240 | flag_leaf | DAH28 | 28.29 | HC |
| SRR4457241 | flag_leaf | DAH28 | 24.73 | HC |
| SRR4457242 | flag_leaf | DAH28 | 26.07 | HC |
| SRR4457243 | flag_leaf | DAH36 | 83.66 | HC |
| SRR4457244 | flag_leaf | DAH36 | 64.55 | HC |
| SRR4457245 | flag_leaf | DAH36 | 68.02 | HC |
| SRR4457246 | flag_leaf | DAH44 | 36.78 | HC |
| SRR4457247 | flag_leaf | DAH44 | 28.67 | HC |
| SRR4457248 | flag_leaf | DAH44 | 34.71 | HC |
| SRR1213690 | flower | wt(flower buds) | 34.84 | HC |
| SRR1213691 | flower | wt | 34.89 | HC |
| SRR8060835 | leaf | wild_type | 180.41 | HC |
| SRR8060836 | leaf | wild_type | 123.31 | HC |
| SRR8060837 | leaf | wild_type | 196.82 | HC |
| SRR8240824 | leaf | wild_type | 12.93 | HC |
| SRR8240825 | leaf | wild_type | 18.52 | HC |
| SRR8240826 | leaf | wild_type | 11.57 | HC |
| SRR8240818 | leaf | wild_type | 8.74 | HC |
| SRR8240819 | leaf | wild_type | 8.62 | HC |
| SRR8240820 | leaf | wild_type | 13.61 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 60.18 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 70.88 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 50.83 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 55.92 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 126.95 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 91.42 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 95.52 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 91.05 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 71.49 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 80.11 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 94.13 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 71.69 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 90.67 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 160.13 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 85.63 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 105.25 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 96.08 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 83.53 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 80.15 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 88.14 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 76.91 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 88.41 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 106.80 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 95.17 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 84.48 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 160.64 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 80.11 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 97.53 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 158.49 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 73.68 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 78.23 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 112.15 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 110.41 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 85.30 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 94.90 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 77.68 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 84.47 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 135.87 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 110.72 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 120.08 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 61.71 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 73.27 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 121.85 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 124.43 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 61.71 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 73.27 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 121.85 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 124.43 | HC |
| SRR1761528 | leaf | drought | 61.71 | HC |
| SRR1761529 | leaf | drought | 73.28 | HC |
| SRR1761530 | leaf | control | 121.17 | HC |
| SRR1761531 | leaf | control | 124.43 | HC |
| SRR504365 | leaf | wt | 121.97 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 17.68 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 13.33 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 21.65 | HC |
| SRR6417967 | leaf | H2O_control | 32.15 | HC |
| SRR6417968 | leaf | H2O_control | 23.87 | HC |
| SRR6417969 | leaf | H2O_control | 38.15 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 44.58 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 41.52 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 47.26 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 52.50 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 80.87 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 78.28 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 57.01 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 44.94 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 60.31 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 43.66 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 69.54 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 74.25 | HC |
| SRR8611900 | leaf | Non-inoculated | 179.28 | HC |
| SRR8611901 | leaf | Non-inoculated | 178.29 | HC |
| SRR8611902 | leaf | Non-inoculated | 176.75 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 355.59 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 333.79 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 347.88 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 54.97 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 65.54 | HC |
| SRR1213692 | leaf | wt | 68.07 | HC |
| SRR1213693 | leaf | wt | 73.07 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 99.41 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 80.25 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 106.81 | HC |
| SRR6502088 | leaf | control | 104.56 | HC |
| SRR6502089 | leaf | control | 109.21 | HC |
| SRR6502090 | leaf | control | 85.79 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 114.21 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 92.10 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 85.08 | HC |
| SRR6502100 | leaf | control | 79.99 | HC |
| SRR6502101 | leaf | control | 84.97 | HC |
| SRR6502102 | leaf | control | 89.49 | HC |
| SRR5856927 | leaf | control | 32.28 | HC |
| SRR5856928 | leaf | control | 25.47 | HC |
| SRR5856929 | leaf | control | 25.73 | HC |
| SRR5856930 | leaf | salt | 18.22 | HC |
| SRR5856931 | leaf | salt | 18.56 | HC |
| SRR5856932 | leaf | salt | 12.39 | HC |
| SRR5856933 | leaf | control | 28.57 | HC |
| SRR5856934 | leaf | control | 26.62 | HC |
| SRR5856935 | leaf | control | 36.92 | HC |
| SRR5856936 | leaf | salt | 19.94 | HC |
| SRR5856937 | leaf | salt | 21.93 | HC |
| SRR5856938 | leaf | salt | 24.44 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 110.36 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 110.54 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 105.13 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 127.79 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 109.20 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 121.80 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 126.88 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 126.34 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 110.17 | HC |
| SRR6168973 | leaf | none (control) | 117.91 | HC |
| SRR6168974 | leaf | none (control) | 92.27 | HC |
| SRR6168975 | leaf | none (control) | 119.94 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 214.54 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 3.33 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 374.17 | HC |
| SRR6168979 | leaf | none (control) | 2.95 | HC |
| SRR6168980 | leaf | none (control) | 13.56 | HC |
| SRR6168981 | leaf | none (control) | 40.27 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 60.57 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 97.41 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 79.71 | HC |
| SRR8582888 | panicle | AM | 85.94 | HC |
| SRR8582889 | panicle | AM | 50.78 | HC |
| SRR8582890 | panicle | AM | 79.42 | HC |
| SRR8582891 | panicle | PM | 167.63 | HC |
| SRR8582892 | panicle | PM | 210.16 | HC |
| SRR8582893 | panicle | PM | 199.71 | HC |
| SRR5110429 | panicle | Dawn | 51.14 | HC |
| SRR5110430 | panicle | Dawn | 64.24 | HC |
| SRR5110431 | panicle | Dawn | 50.88 | HC |
| SRR5110432 | panicle | Dawn | 23.46 | HC |
| SRR4947496 | root | control | 54.70 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 44.86 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 37.33 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 36.21 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 27.46 | HC |
| SRR5110437 | panicle | Dawn + 7h | 31.92 | HC |
| SRR5110438 | panicle | Dawn + 7h | 42.45 | HC |
| SRR5110439 | panicle | Dawn + 7h | 39.95 | HC |
| SRR5110440 | panicle | Dawn + 7h | 34.76 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 30.70 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 38.88 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 37.15 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 47.04 | HC |
| SRR5110445 | panicle | Dusk | 41.48 | HC |
| SRR5110446 | panicle | Dusk | 44.18 | HC |
| SRR5110447 | panicle | Dusk | 41.12 | HC |
| SRR5110448 | panicle | Dusk | 45.60 | HC |
| SRR5110449 | panicle | Dawn + 14h | 64.49 | HC |
| SRR5110450 | panicle | Dawn + 14h | 48.46 | HC |
| SRR5110451 | panicle | Dawn + 14h | 51.85 | HC |
| SRR5110452 | panicle | Dawn + 14h | 55.39 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 37.00 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 33.48 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 46.81 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 47.48 | HC |
| SRR5110457 | panicle | Dawn + 21h | 29.05 | HC |
| SRR5110458 | panicle | Dawn + 21h | 28.57 | HC |
| SRR5110459 | panicle | Dawn + 21h | 31.28 | HC |
| SRR5110460 | panicle | Dawn + 21h | 56.31 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 17.12 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 9.01 | HC |
| SRR1633182 | panicle | WT | 73.84 | HC |
| SRR1633185 | panicle | WT | 108.99 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 48.52 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 49.41 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 75.28 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 71.85 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 125.38 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 140.73 | HC |
| SRR5126147 | root | "mock,1_day" | 23.32 | HC |
| SRR5126148 | root | "mock,1_day" | 18.67 | HC |
| SRR5126149 | root | "mock,1_day" | 34.22 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 33.50 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 34.69 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 19.64 | HC |
| SRR5126153 | root | "mock,7_days" | 26.05 | HC |
| SRR5126155 | root | "mock,7_days" | 35.37 | HC |
| SRR5126157 | root | "mock,7_days" | 83.89 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 33.14 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 39.13 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 31.88 | HC |
| SRR5126165 | root | "mock,14_days" | 31.93 | HC |
| SRR5126167 | root | "mock,14_days" | 22.91 | HC |
| SRR5126169 | root | "mock,14_days" | 50.17 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 41.13 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 37.90 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 60.85 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.96 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 8.40 | HC |
| SRR1213694 | root | wt | 15.11 | HC |
| SRR1213695 | root | wt | 102.11 | HC |
| SRR4947478 | root | control | 25.59 | HC |
| SRR4947479 | root | control | 25.60 | HC |
| SRR4947480 | root | control | 55.81 | HC |
| SRR4947481 | root | control | 81.34 | HC |
| SRR4947482 | root | Al | 16.07 | HC |
| SRR4947483 | root | Al | 20.40 | HC |
| SRR4947484 | root | Al | 44.90 | HC |
| SRR4947485 | root | Al | 57.36 | HC |
| SRR4947487 | root | control | 26.35 | HC |
| SRR4947488 | root | control | 50.15 | HC |
| SRR4947489 | root | control | 56.84 | HC |
| SRR4947490 | root | Al | 25.14 | HC |
| SRR4947491 | root | Al | 36.68 | HC |
| SRR4947492 | root | Al | 51.03 | HC |
| SRR4947493 | root | Al | 43.75 | HC |
| SRR4947494 | root | control | 25.02 | HC |
| SRR4947497 | root | control | 81.50 | HC |
| SRR4947498 | root | Al | 36.63 | HC |
| SRR4947499 | root | Al | 28.17 | HC |
| SRR4947500 | root | Al | 53.37 | HC |
| SRR4947501 | root | Al | 75.36 | HC |
| SRR4947502 | root | control | 42.58 | HC |
| SRR4947503 | root | control | 27.14 | HC |
| SRR4947504 | root | control | 59.07 | HC |
| SRR4947505 | root | control | 68.10 | HC |
| SRR4947506 | root | Al | 28.07 | HC |
| SRR4947507 | root | Al | 39.01 | HC |
| SRR4947508 | root | Al | 41.61 | HC |
| SRR4947509 | root | Al | 48.22 | HC |
| SRR6502091 | root | 100 mM NaCl | 57.33 | HC |
| SRR6502092 | root | 100 mM NaCl | 63.61 | HC |
| SRR6502093 | root | 100 mM NaCl | 70.63 | HC |
| SRR6502094 | root | control | 56.42 | HC |
| SRR6502095 | root | control | 64.81 | HC |
| SRR6502096 | root | control | 43.01 | HC |
| SRR6502103 | root | 100 mM NaCl | 37.21 | HC |
| SRR6502104 | root | 100 mM NaCl | 45.55 | HC |
| SRR6502105 | root | 100 mM NaCl | 61.19 | HC |
| SRR6502106 | root | control | 29.47 | HC |
| SRR6502107 | root | control | 33.44 | HC |
| SRR6502108 | root | control | 28.10 | HC |
| SRR1740434 | root_differentiation_zone | wt | 4.45 | HC |
| SRR1740435 | root_differentiation_zone | wt | 6.13 | HC |
| SRR1740436 | root_differentiation_zone | wt | 6.49 | HC |
| SRR1740431 | root_elongation_zone | wt | 7.48 | HC |
| SRR1740432 | root_elongation_zone | wt | 10.24 | HC |
| SRR1740433 | root_elongation_zone | wt | 8.45 | HC |
| SRR1740429 | root_meristematic_zone | wt | 7.65 | HC |
| SRR1740430 | root_meristematic_zone | wt | 7.45 | HC |
| SRR6441554 | seedling | wild_type | 75.51 | HC |
| SRR6441555 | seedling | wild_type | 78.87 | HC |
| SRR2154086 | seedling | wt | 61.59 | HC |
| SRR2154082 | seedling | wt | 49.95 | HC |
| SRR2154083 | seedling | wt | 46.28 | HC |
| SRR2154084 | seedling | wt | 58.51 | HC |
| SRR2154085 | seedling | wt | 57.34 | HC |
| SRR2154087 | seedling | wt | 55.24 | HC |
| SRR3098741 | seedling | wt | 94.99 | HC |
| SRR3098742 | seedling | wt | 88.76 | HC |
| SRR3098743 | seedling | wt | 101.80 | HC |
| SRR2857719 | seedling | drought_stress_0h | 37.52 | HC |
| SRR2857720 | seedling | drought_stress_1h | 40.84 | HC |
| SRR2857721 | seedling | drought_stress_6h | 25.61 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 16.91 | HC |
| SRR1944583 | seedling | no_treatment | 50.30 | HC |
| SRR358791 | seedling | wt | 74.79 | HC |
| SRR358792 | seedling | wt | 74.21 | HC |
| SRR358793 | seedling | wt | 34.59 | HC |
| SRR358794 | seedling | wt | 34.64 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 24.44 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 27.49 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 21.26 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 23.00 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.96 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 36.81 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 23.32 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 16.70 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 12.07 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 27.45 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 25.88 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 21.32 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 25.63 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 26.23 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 26.49 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 43.80 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 49.81 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 55.33 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 85.40 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 77.37 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 43.96 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 48.54 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 72.57 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 53.97 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 41.39 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 60.89 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 61.04 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 59.90 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 52.32 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 52.53 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 54.50 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 106.12 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 108.38 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 35.85 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 32.36 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 30.13 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 35.74 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 35.23 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 41.50 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 54.17 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 58.90 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 134.51 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 109.19 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 27.71 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 24.48 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 27.15 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 34.63 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 43.03 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 32.21 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 32.00 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 31.80 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 27.21 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 22.53 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 27.03 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 27.49 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 34.15 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 34.23 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 38.78 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 31.27 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 32.98 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 26.36 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 39.01 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 42.54 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 24.33 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 36.52 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 43.63 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 18.86 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 22.05 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 20.92 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 29.14 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 18.12 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 16.29 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 15.39 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 16.32 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 49.40 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 43.70 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 37.44 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 44.78 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 29.91 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 49.10 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 37.32 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 40.92 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 40.59 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 41.02 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 39.26 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 40.22 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 33.13 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 39.04 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 37.64 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 36.57 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 42.17 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 31.39 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 40.47 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 36.02 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 35.44 | HC |