| SRR4457263 | 2nd_leaf | DAH36 | 7.05 | HC |
| SRR5560727 | caryopsis | wild_type | 13.25 | HC |
| SRR5560728 | caryopsis | wild_type | 11.65 | HC |
| SRR5560729 | caryopsis | wild_type | 12.02 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.89 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 5.06 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 13.28 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 13.42 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 13.69 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 14.44 | HC |
| SRR4457244 | flag_leaf | DAH36 | 4.17 | HC |
| SRR4457245 | flag_leaf | DAH36 | 4.50 | HC |
| SRR1213690 | flower | wt(flower buds) | 7.60 | HC |
| SRR1213691 | flower | wt | 7.32 | HC |
| SRR8240824 | leaf | wild_type | 4.03 | HC |
| SRR8240825 | leaf | wild_type | 3.67 | HC |
| SRR8240826 | leaf | wild_type | 5.79 | HC |
| SRR8240818 | leaf | wild_type | 4.79 | HC |
| SRR8240819 | leaf | wild_type | 5.47 | HC |
| SRR8240820 | leaf | wild_type | 4.36 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.66 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 5.16 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.63 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.82 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.67 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 9.00 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 9.02 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 9.00 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 9.02 | HC |
| SRR1761528 | leaf | drought | 9.00 | HC |
| SRR1761529 | leaf | drought | 9.02 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 4.28 | HC |
| SRR8611900 | leaf | Non-inoculated | 43.19 | HC |
| SRR8611901 | leaf | Non-inoculated | 37.44 | HC |
| SRR8611902 | leaf | Non-inoculated | 38.62 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 27.25 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 26.26 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 30.53 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 9.46 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 10.22 | HC |
| SRR1213692 | leaf | wt | 12.72 | HC |
| SRR1213693 | leaf | wt | 15.08 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 8.41 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 8.59 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 6.49 | HC |
| SRR6502088 | leaf | control | 5.36 | HC |
| SRR6502089 | leaf | control | 5.35 | HC |
| SRR6502090 | leaf | control | 5.44 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 5.48 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 6.89 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 7.15 | HC |
| SRR6502100 | leaf | control | 4.95 | HC |
| SRR6502101 | leaf | control | 5.37 | HC |
| SRR6502102 | leaf | control | 4.68 | HC |
| SRR6168973 | leaf | none (control) | 14.27 | HC |
| SRR6168974 | leaf | none (control) | 14.81 | HC |
| SRR6168975 | leaf | none (control) | 18.14 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 7.75 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 4.35 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 11.05 | HC |
| SRR6168979 | leaf | none (control) | 6.16 | HC |
| SRR6168980 | leaf | none (control) | 12.13 | HC |
| SRR6168981 | leaf | none (control) | 11.57 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 14.85 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 6.53 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 10.19 | HC |
| SRR4947496 | root | control | 16.91 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.03 | HC |
| SRR1633182 | panicle | WT | 11.38 | HC |
| SRR1633185 | panicle | WT | 12.10 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 6.34 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.51 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 5.77 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.42 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 10.05 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 14.22 | HC |
| SRR5126147 | root | "mock,1_day" | 8.26 | HC |
| SRR5126148 | root | "mock,1_day" | 7.41 | HC |
| SRR5126149 | root | "mock,1_day" | 9.39 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.95 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 5.10 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 5.81 | HC |
| SRR5126153 | root | "mock,7_days" | 6.64 | HC |
| SRR5126155 | root | "mock,7_days" | 6.42 | HC |
| SRR5126157 | root | "mock,7_days" | 5.85 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 7.32 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 8.10 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 7.04 | HC |
| SRR5126165 | root | "mock,14_days" | 5.53 | HC |
| SRR5126167 | root | "mock,14_days" | 5.00 | HC |
| SRR5126169 | root | "mock,14_days" | 7.42 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.72 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 6.33 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 7.46 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 8.43 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 10.03 | HC |
| SRR1213694 | root | wt | 3.46 | HC |
| SRR1213695 | root | wt | 16.01 | HC |
| SRR4947480 | root | control | 15.88 | HC |
| SRR4947481 | root | control | 14.63 | HC |
| SRR4947484 | root | Al | 17.72 | HC |
| SRR4947485 | root | Al | 14.10 | HC |
| SRR4947488 | root | control | 16.00 | HC |
| SRR4947489 | root | control | 15.12 | HC |
| SRR4947492 | root | Al | 16.69 | HC |
| SRR4947493 | root | Al | 19.51 | HC |
| SRR4947497 | root | control | 11.94 | HC |
| SRR4947500 | root | Al | 12.81 | HC |
| SRR4947501 | root | Al | 12.19 | HC |
| SRR4947504 | root | control | 14.31 | HC |
| SRR4947505 | root | control | 11.97 | HC |
| SRR4947508 | root | Al | 13.60 | HC |
| SRR4947509 | root | Al | 10.68 | HC |
| SRR6502091 | root | 100 mM NaCl | 8.98 | HC |
| SRR6502092 | root | 100 mM NaCl | 11.02 | HC |
| SRR6502093 | root | 100 mM NaCl | 8.33 | HC |
| SRR6502094 | root | control | 11.27 | HC |
| SRR6502095 | root | control | 9.92 | HC |
| SRR6502096 | root | control | 9.27 | HC |
| SRR6502103 | root | 100 mM NaCl | 9.28 | HC |
| SRR6502104 | root | 100 mM NaCl | 9.80 | HC |
| SRR6502105 | root | 100 mM NaCl | 14.95 | HC |
| SRR6502106 | root | control | 12.53 | HC |
| SRR6502107 | root | control | 9.40 | HC |
| SRR6502108 | root | control | 8.85 | HC |
| SRR1740435 | root_differentiation_zone | wt | 4.95 | HC |
| SRR1740436 | root_differentiation_zone | wt | 7.72 | HC |
| SRR1740431 | root_elongation_zone | wt | 5.57 | HC |
| SRR1740432 | root_elongation_zone | wt | 4.01 | HC |
| SRR1740433 | root_elongation_zone | wt | 5.85 | HC |
| SRR1740430 | root_meristematic_zone | wt | 3.77 | HC |
| SRR6441554 | seedling | wild_type | 7.93 | HC |
| SRR6441555 | seedling | wild_type | 8.09 | HC |
| SRR2154086 | seedling | wt | 5.05 | HC |
| SRR2154085 | seedling | wt | 4.90 | HC |
| SRR2154087 | seedling | wt | 4.22 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.73 | HC |
| SRR1944583 | seedling | no_treatment | 6.79 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 4.16 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.47 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.36 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 15.57 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 12.12 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.11 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 9.47 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.77 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 5.27 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 7.52 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 7.47 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 7.07 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 7.15 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 10.30 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 8.10 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 10.38 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 13.04 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 4.82 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 10.73 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 12.51 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.96 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.46 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.58 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.24 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 7.10 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.63 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 7.44 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 7.19 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.13 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.49 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.46 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 5.18 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 4.25 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.69 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.31 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 8.81 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 9.10 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 10.01 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 9.59 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 10.57 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 8.02 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 8.19 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 9.62 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 9.43 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 10.51 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 10.98 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 9.02 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 11.24 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 10.31 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 9.98 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 9.53 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 10.41 | HC |