| SRR4457249 | 2nd_leaf | DAH4 | 5.79 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 5.49 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 5.22 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 4.80 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 4.02 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 4.90 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 4.89 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 4.37 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 7.79 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 6.24 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 6.08 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 8.99 | HC |
| SRR358796 | callus | wt | 12.62 | HC |
| SRR358798 | callus | wt | 9.44 | HC |
| SRR6320498 | carpel | wt | 6.74 | HC |
| SRR5560727 | caryopsis | wild_type | 34.36 | HC |
| SRR5560728 | caryopsis | wild_type | 24.92 | HC |
| SRR5560729 | caryopsis | wild_type | 23.01 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 5.67 | HC |
| SRR7265404 | coleoptile | 2dN | 4.33 | HC |
| SRR7265405 | coleoptile | 2dN | 4.21 | HC |
| SRR7265416 | coleoptile | 4dN | 4.51 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 28.02 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 22.86 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 30.11 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 15.94 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 19.60 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 23.15 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 21.41 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 7.53 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 25.22 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 22.15 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 11.05 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 15.91 | HC |
| SRR2338866 | endosprem | control | 7.61 | HC |
| SRR2338867 | endosprem | control | 2.91 | HC |
| SRR2338868 | endosprem | high_temperature | 3.94 | HC |
| SRR4457231 | flag_leaf | DAH4 | 4.62 | HC |
| SRR4457232 | flag_leaf | DAH4 | 3.61 | HC |
| SRR4457233 | flag_leaf | DAH4 | 4.10 | HC |
| SRR4457234 | flag_leaf | DAH12 | 3.15 | HC |
| SRR4457235 | flag_leaf | DAH12 | 8.91 | HC |
| SRR4457236 | flag_leaf | DAH12 | 8.07 | HC |
| SRR4457237 | flag_leaf | DAH20 | 6.11 | HC |
| SRR4457238 | flag_leaf | DAH20 | 6.94 | HC |
| SRR4457239 | flag_leaf | DAH20 | 6.96 | HC |
| SRR4457240 | flag_leaf | DAH28 | 7.24 | HC |
| SRR4457241 | flag_leaf | DAH28 | 6.05 | HC |
| SRR1213690 | flower | wt(flower buds) | 3.96 | HC |
| SRR8060835 | leaf | wild_type | 4.50 | HC |
| SRR8060837 | leaf | wild_type | 4.29 | HC |
| SRR8240824 | leaf | wild_type | 3.58 | HC |
| SRR8240825 | leaf | wild_type | 4.84 | HC |
| SRR8240818 | leaf | wild_type | 2.95 | HC |
| SRR8240819 | leaf | wild_type | 3.68 | HC |
| SRR8240820 | leaf | wild_type | 3.70 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.49 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.81 | HC |
| SRR504365 | leaf | wt | 5.55 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 4.08 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 5.13 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 5.46 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 6.01 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 4.15 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 6.24 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 4.73 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 5.09 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.64 | HC |
| SRR8611900 | leaf | Non-inoculated | 23.09 | HC |
| SRR8611901 | leaf | Non-inoculated | 20.18 | HC |
| SRR8611902 | leaf | Non-inoculated | 22.76 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 26.92 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 25.69 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 30.89 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 4.60 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.86 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 6.27 | HC |
| SRR5856927 | leaf | control | 9.44 | HC |
| SRR5856928 | leaf | control | 10.06 | HC |
| SRR5856929 | leaf | control | 13.87 | HC |
| SRR5856930 | leaf | salt | 5.95 | HC |
| SRR5856931 | leaf | salt | 5.07 | HC |
| SRR5856932 | leaf | salt | 3.60 | HC |
| SRR5856933 | leaf | control | 9.79 | HC |
| SRR5856934 | leaf | control | 8.47 | HC |
| SRR5856935 | leaf | control | 8.71 | HC |
| SRR5856936 | leaf | salt | 4.00 | HC |
| SRR5856937 | leaf | salt | 3.96 | HC |
| SRR5856938 | leaf | salt | 2.88 | HC |
| SRR6168973 | leaf | none (control) | 60.80 | HC |
| SRR6168974 | leaf | none (control) | 65.45 | HC |
| SRR6168975 | leaf | none (control) | 53.62 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 78.75 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 4.63 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 70.61 | HC |
| SRR6168979 | leaf | none (control) | 5.25 | HC |
| SRR6168980 | leaf | none (control) | 14.83 | HC |
| SRR6168981 | leaf | none (control) | 28.01 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 48.76 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 25.90 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 38.99 | HC |
| SRR8582888 | panicle | AM | 5.54 | HC |
| SRR8582889 | panicle | AM | 7.98 | HC |
| SRR8582890 | panicle | AM | 3.97 | HC |
| SRR8582891 | panicle | PM | 11.04 | HC |
| SRR8582893 | panicle | PM | 12.53 | HC |
| SRR4947496 | root | control | 10.39 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.27 | HC |
| SRR5110439 | panicle | Dawn + 7h | 7.91 | HC |
| SRR5110446 | panicle | Dusk | 4.89 | HC |
| SRR5110447 | panicle | Dusk | 8.28 | HC |
| SRR5110450 | panicle | Dawn + 14h | 4.73 | HC |
| SRR5110451 | panicle | Dawn + 14h | 7.06 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 5.23 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 4.65 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 5.33 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.33 | HC |
| SRR5110458 | panicle | Dawn + 21h | 5.69 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.44 | HC |
| SRR1633182 | panicle | WT | 7.30 | HC |
| SRR1633185 | panicle | WT | 11.43 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 6.35 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.78 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 13.89 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 11.85 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 29.00 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 53.79 | HC |
| SRR5126147 | root | "mock,1_day" | 5.35 | HC |
| SRR5126149 | root | "mock,1_day" | 6.35 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 5.01 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 5.27 | HC |
| SRR5126153 | root | "mock,7_days" | 5.70 | HC |
| SRR5126155 | root | "mock,7_days" | 8.88 | HC |
| SRR5126157 | root | "mock,7_days" | 10.04 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.74 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 7.98 | HC |
| SRR5126167 | root | "mock,14_days" | 5.58 | HC |
| SRR5126169 | root | "mock,14_days" | 7.45 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 6.46 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 5.09 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 8.59 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 10.75 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 17.01 | HC |
| SRR1213694 | root | wt | 4.83 | HC |
| SRR4947478 | root | control | 4.78 | HC |
| SRR4947480 | root | control | 9.41 | HC |
| SRR4947481 | root | control | 14.07 | HC |
| SRR4947484 | root | Al | 8.27 | HC |
| SRR4947485 | root | Al | 11.55 | HC |
| SRR4947488 | root | control | 9.45 | HC |
| SRR4947489 | root | control | 12.00 | HC |
| SRR4947492 | root | Al | 9.94 | HC |
| SRR4947493 | root | Al | 14.22 | HC |
| SRR4947497 | root | control | 15.04 | HC |
| SRR4947500 | root | Al | 6.78 | HC |
| SRR4947501 | root | Al | 10.41 | HC |
| SRR4947504 | root | control | 10.09 | HC |
| SRR4947505 | root | control | 11.44 | HC |
| SRR4947506 | root | Al | 4.86 | HC |
| SRR4947508 | root | Al | 8.23 | HC |
| SRR4947509 | root | Al | 8.60 | HC |
| SRR6502091 | root | 100 mM NaCl | 8.53 | HC |
| SRR6502092 | root | 100 mM NaCl | 13.16 | HC |
| SRR6502093 | root | 100 mM NaCl | 8.27 | HC |
| SRR6502094 | root | control | 11.62 | HC |
| SRR6502095 | root | control | 10.16 | HC |
| SRR6502096 | root | control | 9.03 | HC |
| SRR6502103 | root | 100 mM NaCl | 7.31 | HC |
| SRR6502104 | root | 100 mM NaCl | 10.83 | HC |
| SRR6502105 | root | 100 mM NaCl | 14.69 | HC |
| SRR6502106 | root | control | 10.15 | HC |
| SRR6502107 | root | control | 7.35 | HC |
| SRR6502108 | root | control | 7.20 | HC |
| SRR1740436 | root_differentiation_zone | wt | 4.77 | HC |
| SRR1740433 | root_elongation_zone | wt | 3.94 | HC |
| SRR6441554 | seedling | wild_type | 5.08 | HC |
| SRR6441555 | seedling | wild_type | 5.97 | HC |
| SRR2154086 | seedling | wt | 4.59 | HC |
| SRR3098741 | seedling | wt | 8.77 | HC |
| SRR3098742 | seedling | wt | 7.86 | HC |
| SRR3098743 | seedling | wt | 8.32 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.53 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.21 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 5.94 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 5.02 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 7.10 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.71 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 15.16 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.98 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.08 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.72 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.37 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 3.43 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 5.61 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 4.48 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 7.08 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 6.99 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 10.69 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 8.48 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 6.83 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 9.36 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 8.57 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 8.58 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.91 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 7.04 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.42 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 37.22 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 34.79 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 38.64 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 47.60 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 64.94 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 53.67 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 24.11 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 37.16 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 23.77 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 32.58 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 38.22 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 27.90 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 23.91 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 31.60 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 39.88 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 26.49 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 32.40 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 23.12 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 27.83 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 34.36 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 31.95 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 34.86 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 31.91 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 9.29 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 8.59 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 21.64 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 16.51 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 14.22 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 20.00 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 16.45 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 14.15 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 34.78 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 38.89 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 44.59 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 36.57 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 41.04 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 38.43 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 26.97 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 30.81 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 28.75 | HC |