| SRR3745125 | anther | wt | 7.38 | HC |
| SRR3745126 | anther | wt | 6.85 | HC |
| SRR3745127 | anther | wt | 6.47 | HC |
| SRR358796 | callus | wt | 9.61 | HC |
| SRR358797 | callus | wt | 11.36 | HC |
| SRR358798 | callus | wt | 11.75 | HC |
| SRR5560727 | caryopsis | wild_type | 5.49 | HC |
| SRR5560728 | caryopsis | wild_type | 8.98 | HC |
| SRR5560729 | caryopsis | wild_type | 8.88 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 6.89 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 6.37 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 5.50 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 5.39 | HC |
| SRR7265401 | coleoptile | 2dA | 3.95 | HC |
| SRR7265406 | coleoptile | 3dA | 3.77 | HC |
| SRR7265409 | coleoptile | 3dN | 4.44 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 4.74 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 5.34 | HC |
| SRR7265378 | embryo | 1hA | 3.43 | HC |
| SRR7265381 | embryo | 1hN | 3.29 | HC |
| SRR7265382 | embryo | 3hA | 5.98 | HC |
| SRR7265383 | embryo | 3hA | 5.64 | HC |
| SRR7265384 | embryo | 3hA | 6.14 | HC |
| SRR7265388 | embryo | 12hA | 7.54 | HC |
| SRR7265389 | embryo | 12hA | 6.33 | HC |
| SRR7265390 | embryo | 12hA | 6.48 | HC |
| SRR7265391 | embryo | 12hN | 7.95 | HC |
| SRR7265392 | embryo | 12hN | 7.02 | HC |
| SRR7265393 | embryo | 12hN | 5.75 | HC |
| SRR7265394 | embryo | 24hA | 6.20 | HC |
| SRR7265395 | embryo | 24hA | 5.71 | HC |
| SRR7265397 | embryo | 24hN | 6.12 | HC |
| SRR7265398 | embryo | 24hN | 5.09 | HC |
| SRR2338867 | endosprem | control | 2.38 | HC |
| SRR2338869 | endosprem | high_temperature | 4.93 | HC |
| SRR976168 | flag_leaf | wild_type | 6.38 | HC |
| SRR4457232 | flag_leaf | DAH4 | 3.31 | HC |
| SRR1213690 | flower | wt(flower buds) | 6.65 | HC |
| SRR1213691 | flower | wt | 7.26 | HC |
| SRR8060835 | leaf | wild_type | 4.26 | HC |
| SRR8060836 | leaf | wild_type | 5.23 | HC |
| SRR8060837 | leaf | wild_type | 5.20 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.26 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 6.05 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 5.60 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 7.80 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.54 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.83 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.60 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.20 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.84 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.25 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 9.42 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 7.60 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.90 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.54 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.60 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.29 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 5.61 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 5.52 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.31 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.52 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.75 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.04 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.71 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.98 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.11 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.88 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.71 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.82 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.33 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 7.19 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.49 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 8.84 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 6.46 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 7.29 | HC |
| SRR504365 | leaf | wt | 6.31 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.67 | HC |
| SRR6417968 | leaf | H2O_control | 3.63 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 3.26 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 5.55 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 4.54 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 3.76 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 6.09 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 4.92 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 3.59 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 5.88 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 3.63 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.00 | HC |
| SRR8611900 | leaf | Non-inoculated | 5.50 | HC |
| SRR8611901 | leaf | Non-inoculated | 5.88 | HC |
| SRR8611902 | leaf | Non-inoculated | 4.98 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 7.40 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 8.07 | HC |
| SRR1213692 | leaf | wt | 5.96 | HC |
| SRR1213693 | leaf | wt | 4.90 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 5.05 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 5.87 | HC |
| SRR6502089 | leaf | control | 4.59 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 7.10 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 6.96 | HC |
| SRR6502100 | leaf | control | 4.50 | HC |
| SRR6502101 | leaf | control | 4.88 | HC |
| SRR5856933 | leaf | control | 2.71 | HC |
| SRR5856935 | leaf | control | 2.47 | HC |
| SRR5856938 | leaf | salt | 1.99 | HC |
| SRR6168973 | leaf | none (control) | 9.59 | HC |
| SRR6168974 | leaf | none (control) | 9.71 | HC |
| SRR6168975 | leaf | none (control) | 5.19 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 9.31 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 9.34 | HC |
| SRR6168981 | leaf | none (control) | 2.78 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 3.37 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 3.64 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.40 | HC |
| SRR8582889 | panicle | AM | 1.90 | HC |
| SRR8582890 | panicle | AM | 3.50 | HC |
| SRR8582891 | panicle | PM | 6.63 | HC |
| SRR8582892 | panicle | PM | 9.46 | HC |
| SRR8582893 | panicle | PM | 7.46 | HC |
| SRR4947496 | root | control | 5.40 | HC |
| SRR5110437 | panicle | Dawn + 7h | 5.33 | HC |
| SRR5110438 | panicle | Dawn + 7h | 4.92 | HC |
| SRR5110446 | panicle | Dusk | 5.47 | HC |
| SRR5110457 | panicle | Dawn + 21h | 3.70 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.62 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 3.03 | HC |
| SRR1633182 | panicle | WT | 37.68 | HC |
| SRR1633185 | panicle | WT | 47.60 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 8.08 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 8.25 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 8.28 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 8.65 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 11.89 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 12.06 | HC |
| SRR5126147 | root | "mock,1_day" | 9.18 | HC |
| SRR5126148 | root | "mock,1_day" | 7.83 | HC |
| SRR5126149 | root | "mock,1_day" | 7.03 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 9.74 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 8.11 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 7.90 | HC |
| SRR5126153 | root | "mock,7_days" | 6.80 | HC |
| SRR5126155 | root | "mock,7_days" | 5.92 | HC |
| SRR5126157 | root | "mock,7_days" | 6.56 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 7.74 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 7.85 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 7.93 | HC |
| SRR5126165 | root | "mock,14_days" | 5.56 | HC |
| SRR5126167 | root | "mock,14_days" | 4.66 | HC |
| SRR5126169 | root | "mock,14_days" | 7.03 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 6.98 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 7.12 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 9.39 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.57 | HC |
| SRR1213694 | root | wt | 3.27 | HC |
| SRR1213695 | root | wt | 5.66 | HC |
| SRR4947480 | root | control | 5.79 | HC |
| SRR4947481 | root | control | 8.34 | HC |
| SRR4947484 | root | Al | 6.42 | HC |
| SRR4947485 | root | Al | 6.98 | HC |
| SRR4947488 | root | control | 5.75 | HC |
| SRR4947489 | root | control | 6.25 | HC |
| SRR4947492 | root | Al | 5.87 | HC |
| SRR4947493 | root | Al | 6.11 | HC |
| SRR4947497 | root | control | 7.60 | HC |
| SRR4947500 | root | Al | 7.69 | HC |
| SRR4947501 | root | Al | 9.09 | HC |
| SRR4947504 | root | control | 7.41 | HC |
| SRR4947505 | root | control | 8.76 | HC |
| SRR4947508 | root | Al | 6.23 | HC |
| SRR4947509 | root | Al | 8.89 | HC |
| SRR6502091 | root | 100 mM NaCl | 6.55 | HC |
| SRR6502092 | root | 100 mM NaCl | 7.22 | HC |
| SRR6502093 | root | 100 mM NaCl | 6.72 | HC |
| SRR6502094 | root | control | 6.01 | HC |
| SRR6502095 | root | control | 6.68 | HC |
| SRR6502096 | root | control | 5.56 | HC |
| SRR6502103 | root | 100 mM NaCl | 7.31 | HC |
| SRR6502104 | root | 100 mM NaCl | 7.72 | HC |
| SRR6502105 | root | 100 mM NaCl | 7.26 | HC |
| SRR6502106 | root | control | 6.22 | HC |
| SRR6502107 | root | control | 6.19 | HC |
| SRR6502108 | root | control | 7.81 | HC |
| SRR1740434 | root_differentiation_zone | wt | 4.02 | HC |
| SRR1740435 | root_differentiation_zone | wt | 4.08 | HC |
| SRR1740436 | root_differentiation_zone | wt | 5.22 | HC |
| SRR1740431 | root_elongation_zone | wt | 5.17 | HC |
| SRR1740432 | root_elongation_zone | wt | 8.54 | HC |
| SRR1740433 | root_elongation_zone | wt | 7.11 | HC |
| SRR1740428 | root_meristematic_zone | wt | 6.43 | HC |
| SRR1740429 | root_meristematic_zone | wt | 6.53 | HC |
| SRR1740430 | root_meristematic_zone | wt | 8.38 | HC |
| SRR6441554 | seedling | wild_type | 4.01 | HC |
| SRR6441555 | seedling | wild_type | 3.60 | HC |
| SRR2154086 | seedling | wt | 9.10 | HC |
| SRR2154082 | seedling | wt | 4.81 | HC |
| SRR2154083 | seedling | wt | 7.18 | HC |
| SRR2154084 | seedling | wt | 11.07 | HC |
| SRR2154085 | seedling | wt | 8.62 | HC |
| SRR2154087 | seedling | wt | 8.87 | HC |
| SRR3098741 | seedling | wt | 4.46 | HC |
| SRR3098742 | seedling | wt | 4.60 | HC |
| SRR3098743 | seedling | wt | 4.48 | HC |
| SRR2857719 | seedling | drought_stress_0h | 7.04 | HC |
| SRR2857720 | seedling | drought_stress_1h | 5.48 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.79 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 4.08 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.66 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.24 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 3.14 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 3.36 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 4.13 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.51 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.74 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 6.55 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.08 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.07 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 5.46 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 5.21 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.41 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.56 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.93 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.83 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.09 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 4.01 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.42 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.68 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.04 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.07 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.75 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.72 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.41 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.55 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 13.40 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 12.25 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 13.61 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 11.73 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 16.81 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 11.40 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 15.05 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 12.53 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 12.88 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 9.69 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 11.88 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 10.56 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 14.62 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 11.86 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 15.52 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 13.06 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 12.30 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 12.97 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 12.61 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 15.49 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 9.89 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 12.42 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 10.13 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 11.61 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 10.30 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 10.35 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 12.13 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 11.05 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 12.35 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 9.36 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 10.09 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 10.61 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 3.72 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 4.33 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 3.29 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 3.55 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.87 | HC |