| SRR4457250 | 2nd_leaf | DAH4 | 5.53 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 4.55 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 7.34 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 11.28 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 12.19 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 19.64 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 10.69 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 12.05 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 21.45 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 12.11 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 13.85 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 19.28 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 18.20 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 14.59 | HC |
| SRR358795 | callus | wt | 628.56 | HC |
| SRR358796 | callus | wt | 627.79 | HC |
| SRR358797 | callus | wt | 348.07 | HC |
| SRR358798 | callus | wt | 363.00 | HC |
| SRR5560727 | caryopsis | wild_type | 6.24 | HC |
| SRR5560728 | caryopsis | wild_type | 18.82 | HC |
| SRR5560729 | caryopsis | wild_type | 13.99 | HC |
| SRR4947495 | root | control | 58.90 | HC |
| SRR7265403 | coleoptile | 2dN | 102.44 | HC |
| SRR7265404 | coleoptile | 2dN | 97.81 | HC |
| SRR7265405 | coleoptile | 2dN | 96.97 | HC |
| SRR7265409 | coleoptile | 3dN | 115.30 | HC |
| SRR7265410 | coleoptile | 3dN | 103.03 | HC |
| SRR7265411 | coleoptile | 3dN | 76.09 | HC |
| SRR7265412 | coleoptile | 4dA | 6.83 | HC |
| SRR7265413 | coleoptile | 4dA | 5.38 | HC |
| SRR7265414 | coleoptile | 4dA | 8.12 | HC |
| SRR7265415 | coleoptile | 4dN | 197.80 | HC |
| SRR7265416 | coleoptile | 4dN | 183.48 | HC |
| SRR7265417 | coleoptile | 4dN | 137.37 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 43.87 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 51.48 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 35.87 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 39.82 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 37.47 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 39.15 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 7.60 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 5.08 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 5.52 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 7.36 | HC |
| SRR7265388 | embryo | 12hA | 10.23 | HC |
| SRR7265389 | embryo | 12hA | 8.53 | HC |
| SRR7265390 | embryo | 12hA | 6.04 | HC |
| SRR7265394 | embryo | 24hA | 5.60 | HC |
| SRR7265395 | embryo | 24hA | 7.97 | HC |
| SRR7265396 | embryo | 24hA | 6.93 | HC |
| SRR7265397 | embryo | 24hN | 19.18 | HC |
| SRR7265398 | embryo | 24hN | 9.62 | HC |
| SRR7265399 | embryo | 24hN | 8.00 | HC |
| SRR976168 | flag_leaf | wild_type | 579.89 | HC |
| SRR4457231 | flag_leaf | DAH4 | 13.46 | HC |
| SRR4457232 | flag_leaf | DAH4 | 9.39 | HC |
| SRR4457233 | flag_leaf | DAH4 | 11.58 | HC |
| SRR4457234 | flag_leaf | DAH12 | 4.87 | HC |
| SRR4457235 | flag_leaf | DAH12 | 5.13 | HC |
| SRR4457236 | flag_leaf | DAH12 | 4.15 | HC |
| SRR4457238 | flag_leaf | DAH20 | 5.57 | HC |
| SRR4457240 | flag_leaf | DAH28 | 7.41 | HC |
| SRR4457242 | flag_leaf | DAH28 | 4.75 | HC |
| SRR4457246 | flag_leaf | DAH44 | 9.75 | HC |
| SRR4457248 | flag_leaf | DAH44 | 9.01 | HC |
| SRR1213690 | flower | wt(flower buds) | 15.29 | HC |
| SRR1213691 | flower | wt | 8.81 | HC |
| SRR8060835 | leaf | wild_type | 657.19 | HC |
| SRR8060836 | leaf | wild_type | 1183.02 | HC |
| SRR8060837 | leaf | wild_type | 615.33 | HC |
| SRR8240824 | leaf | wild_type | 22.07 | HC |
| SRR8240825 | leaf | wild_type | 16.66 | HC |
| SRR8240826 | leaf | wild_type | 5.58 | HC |
| SRR8240819 | leaf | wild_type | 3.67 | HC |
| SRR8240820 | leaf | wild_type | 4.15 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 12.57 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 7.63 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 9.62 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 8.58 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.71 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.26 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 17.58 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 9.27 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 13.18 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.46 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 11.66 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.63 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 12.07 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 9.22 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 11.82 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 11.86 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 6.37 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 19.93 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 17.95 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 6.37 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 19.93 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 17.95 | HC |
| SRR1761529 | leaf | drought | 6.37 | HC |
| SRR1761530 | leaf | control | 19.93 | HC |
| SRR1761531 | leaf | control | 17.95 | HC |
| SRR504365 | leaf | wt | 36.60 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 44.70 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 61.59 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 6.07 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 9.10 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 37.79 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 30.88 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 16.06 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 22.49 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 46.23 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 37.47 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 63.40 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 16.15 | HC |
| SRR8611900 | leaf | Non-inoculated | 65.78 | HC |
| SRR8611901 | leaf | Non-inoculated | 61.84 | HC |
| SRR8611902 | leaf | Non-inoculated | 68.45 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 19.02 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 25.06 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 26.38 | HC |
| SRR1213692 | leaf | wt | 11.89 | HC |
| SRR5856927 | leaf | control | 239.25 | HC |
| SRR5856928 | leaf | control | 129.96 | HC |
| SRR5856929 | leaf | control | 270.33 | HC |
| SRR5856930 | leaf | salt | 109.94 | HC |
| SRR5856931 | leaf | salt | 51.60 | HC |
| SRR5856932 | leaf | salt | 40.98 | HC |
| SRR5856933 | leaf | control | 110.04 | HC |
| SRR5856934 | leaf | control | 121.50 | HC |
| SRR5856935 | leaf | control | 67.27 | HC |
| SRR5856936 | leaf | salt | 18.10 | HC |
| SRR5856937 | leaf | salt | 15.09 | HC |
| SRR5856938 | leaf | salt | 11.07 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 9.83 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 9.97 | HC |
| SRR6168973 | leaf | none (control) | 7.57 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 20.73 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 5.64 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 4.76 | HC |
| SRR8582888 | panicle | AM | 215.82 | HC |
| SRR8582889 | panicle | AM | 124.51 | HC |
| SRR8582890 | panicle | AM | 208.42 | HC |
| SRR8582891 | panicle | PM | 260.76 | HC |
| SRR8582892 | panicle | PM | 650.60 | HC |
| SRR8582893 | panicle | PM | 295.60 | HC |
| SRR5110429 | panicle | Dawn | 10.14 | HC |
| SRR5110430 | panicle | Dawn | 25.01 | HC |
| SRR5110431 | panicle | Dawn | 8.72 | HC |
| SRR5110432 | panicle | Dawn | 4.08 | HC |
| SRR4947496 | root | control | 64.68 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 17.29 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 23.94 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 15.88 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 8.51 | HC |
| SRR5110437 | panicle | Dawn + 7h | 35.12 | HC |
| SRR5110438 | panicle | Dawn + 7h | 63.79 | HC |
| SRR5110439 | panicle | Dawn + 7h | 11.35 | HC |
| SRR5110440 | panicle | Dawn + 7h | 27.62 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 57.32 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 37.13 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 41.84 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 39.22 | HC |
| SRR5110445 | panicle | Dusk | 30.40 | HC |
| SRR5110446 | panicle | Dusk | 17.55 | HC |
| SRR5110447 | panicle | Dusk | 32.62 | HC |
| SRR5110448 | panicle | Dusk | 17.45 | HC |
| SRR5110449 | panicle | Dawn + 14h | 30.27 | HC |
| SRR5110450 | panicle | Dawn + 14h | 22.47 | HC |
| SRR5110451 | panicle | Dawn + 14h | 17.55 | HC |
| SRR5110452 | panicle | Dawn + 14h | 17.00 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 8.37 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 9.83 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 10.64 | HC |
| SRR5110457 | panicle | Dawn + 21h | 25.27 | HC |
| SRR5110459 | panicle | Dawn + 21h | 4.52 | HC |
| SRR5110460 | panicle | Dawn + 21h | 16.33 | HC |
| SRR1633182 | panicle | WT | 24.72 | HC |
| SRR1633185 | panicle | WT | 42.80 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 110.09 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 129.99 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 205.28 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 222.75 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 246.22 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 88.58 | HC |
| SRR5126153 | root | "mock,7_days" | 8.94 | HC |
| SRR5126155 | root | "mock,7_days" | 8.39 | HC |
| SRR5126157 | root | "mock,7_days" | 5.94 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 9.02 | HC |
| SRR5126165 | root | "mock,14_days" | 11.93 | HC |
| SRR5126167 | root | "mock,14_days" | 14.14 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 138.42 | HC |
| SRR1213695 | root | wt | 6.68 | HC |
| SRR4947478 | root | control | 54.25 | HC |
| SRR4947479 | root | control | 52.76 | HC |
| SRR4947480 | root | control | 67.72 | HC |
| SRR4947481 | root | control | 54.05 | HC |
| SRR4947483 | root | Al | 5.37 | HC |
| SRR4947484 | root | Al | 5.05 | HC |
| SRR4947485 | root | Al | 6.25 | HC |
| SRR4947487 | root | control | 15.10 | HC |
| SRR4947488 | root | control | 17.07 | HC |
| SRR4947489 | root | control | 31.37 | HC |
| SRR4947492 | root | Al | 6.20 | HC |
| SRR4947493 | root | Al | 6.30 | HC |
| SRR4947494 | root | control | 56.26 | HC |
| SRR4947497 | root | control | 65.28 | HC |
| SRR4947498 | root | Al | 6.27 | HC |
| SRR4947499 | root | Al | 8.37 | HC |
| SRR4947500 | root | Al | 6.52 | HC |
| SRR4947501 | root | Al | 10.85 | HC |
| SRR4947502 | root | control | 25.83 | HC |
| SRR4947503 | root | control | 37.05 | HC |
| SRR4947504 | root | control | 76.01 | HC |
| SRR4947505 | root | control | 85.61 | HC |
| SRR2154086 | seedling | wt | 10.15 | HC |
| SRR2154082 | seedling | wt | 25.04 | HC |
| SRR2154083 | seedling | wt | 34.11 | HC |
| SRR2154084 | seedling | wt | 5.86 | HC |
| SRR2154085 | seedling | wt | 14.40 | HC |
| SRR2154087 | seedling | wt | 15.74 | HC |
| SRR3098741 | seedling | wt | 100.00 | HC |
| SRR3098742 | seedling | wt | 231.72 | HC |
| SRR3098743 | seedling | wt | 130.91 | HC |
| SRR2857719 | seedling | drought_stress_0h | 104.59 | HC |
| SRR2857720 | seedling | drought_stress_1h | 131.78 | HC |
| SRR2857721 | seedling | drought_stress_6h | 72.61 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 34.45 | HC |
| SRR1944583 | seedling | no_treatment | 59.58 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 10.25 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.24 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 10.37 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.19 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 5.77 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 9.89 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 23.62 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 5.70 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 7.69 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 8.58 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 6.12 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 11.68 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 16.31 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 6.42 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 15.85 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 11.42 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 49.00 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 35.72 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.45 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 13.77 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 17.25 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 8.92 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 10.56 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.15 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 17.29 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 24.83 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.65 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 11.03 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 13.11 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 13.70 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 15.31 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 6.80 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.78 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 4.36 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 49.49 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 46.30 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 34.92 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 36.65 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 33.32 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 33.55 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 73.18 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 24.59 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 138.05 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 112.62 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 29.50 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 17.08 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 26.96 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 61.46 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 28.10 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 11.45 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 19.46 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 43.87 | HC |