| SRR5560728 | caryopsis | wild_type | 6.03 | HC |
| SRR5560729 | caryopsis | wild_type | 9.67 | HC |
| SRR4947495 | root | control | 12.67 | HC |
| SRR7265400 | coleoptile | 2dA | 6.88 | HC |
| SRR7265401 | coleoptile | 2dA | 7.04 | HC |
| SRR7265402 | coleoptile | 2dA | 6.59 | HC |
| SRR7265403 | coleoptile | 2dN | 11.21 | HC |
| SRR7265404 | coleoptile | 2dN | 10.27 | HC |
| SRR7265405 | coleoptile | 2dN | 10.91 | HC |
| SRR7265406 | coleoptile | 3dA | 5.15 | HC |
| SRR7265407 | coleoptile | 3dA | 4.98 | HC |
| SRR7265409 | coleoptile | 3dN | 6.17 | HC |
| SRR7265410 | coleoptile | 3dN | 6.10 | HC |
| SRR7265411 | coleoptile | 3dN | 5.94 | HC |
| SRR7265416 | coleoptile | 4dN | 4.66 | HC |
| SRR7265417 | coleoptile | 4dN | 4.04 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 5.52 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 10.50 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 10.73 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 5.73 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 17.11 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 10.57 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 9.66 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 4.77 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 16.29 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 10.28 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 11.38 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 16.74 | HC |
| SRR7265373 | embryo | dry seed 0 h | 9.86 | HC |
| SRR7265374 | embryo | dry seed 0 h | 11.74 | HC |
| SRR7265375 | embryo | dry seed 0 h | 3.05 | HC |
| SRR7265376 | embryo | 1hA | 7.16 | HC |
| SRR7265377 | embryo | 1hA | 9.14 | HC |
| SRR7265378 | embryo | 1hA | 7.90 | HC |
| SRR7265379 | embryo | 1hN | 10.71 | HC |
| SRR7265380 | embryo | 1hN | 8.73 | HC |
| SRR7265381 | embryo | 1hN | 9.66 | HC |
| SRR7265382 | embryo | 3hA | 8.48 | HC |
| SRR7265383 | embryo | 3hA | 8.50 | HC |
| SRR7265384 | embryo | 3hA | 9.30 | HC |
| SRR7265385 | embryo | 3hN | 8.17 | HC |
| SRR7265386 | embryo | 3hN | 7.76 | HC |
| SRR7265387 | embryo | 3hN | 7.70 | HC |
| SRR7265388 | embryo | 12hA | 16.51 | HC |
| SRR7265389 | embryo | 12hA | 19.71 | HC |
| SRR7265390 | embryo | 12hA | 17.09 | HC |
| SRR7265391 | embryo | 12hN | 21.73 | HC |
| SRR7265392 | embryo | 12hN | 19.89 | HC |
| SRR7265393 | embryo | 12hN | 23.85 | HC |
| SRR7265394 | embryo | 24hA | 10.40 | HC |
| SRR7265395 | embryo | 24hA | 15.70 | HC |
| SRR7265396 | embryo | 24hA | 12.08 | HC |
| SRR7265397 | embryo | 24hN | 20.60 | HC |
| SRR7265398 | embryo | 24hN | 19.58 | HC |
| SRR7265399 | embryo | 24hN | 20.62 | HC |
| SRR1213690 | flower | wt(flower buds) | 9.96 | HC |
| SRR1213691 | flower | wt | 7.72 | HC |
| SRR8060835 | leaf | wild_type | 23.47 | HC |
| SRR8060836 | leaf | wild_type | 31.70 | HC |
| SRR8060837 | leaf | wild_type | 15.44 | HC |
| SRR8240824 | leaf | wild_type | 3.29 | HC |
| SRR8240825 | leaf | wild_type | 2.63 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.10 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 5.29 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 9.28 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 6.67 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.72 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.03 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.57 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.32 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.72 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.69 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 6.77 | HC |
| SRR8611900 | leaf | Non-inoculated | 20.77 | HC |
| SRR8611901 | leaf | Non-inoculated | 15.83 | HC |
| SRR8611902 | leaf | Non-inoculated | 22.08 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 5.79 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 6.82 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 5.70 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 11.54 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 15.65 | HC |
| SRR1213692 | leaf | wt | 17.49 | HC |
| SRR1213693 | leaf | wt | 14.07 | HC |
| SRR6502100 | leaf | control | 4.69 | HC |
| SRR5856927 | leaf | control | 4.08 | HC |
| SRR5856928 | leaf | control | 5.10 | HC |
| SRR5856929 | leaf | control | 6.94 | HC |
| SRR5856930 | leaf | salt | 2.63 | HC |
| SRR5856931 | leaf | salt | 2.00 | HC |
| SRR5856932 | leaf | salt | 2.64 | HC |
| SRR5856933 | leaf | control | 4.52 | HC |
| SRR5856934 | leaf | control | 4.98 | HC |
| SRR5856935 | leaf | control | 5.11 | HC |
| SRR5856936 | leaf | salt | 2.36 | HC |
| SRR5856938 | leaf | salt | 2.48 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 8.31 | HC |
| SRR4947496 | root | control | 10.38 | HC |
| SRR5110437 | panicle | Dawn + 7h | 8.81 | HC |
| SRR5110438 | panicle | Dawn + 7h | 11.04 | HC |
| SRR5110440 | panicle | Dawn + 7h | 9.81 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 8.99 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 5.95 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 12.00 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 7.36 | HC |
| SRR5110447 | panicle | Dusk | 5.44 | HC |
| SRR5110448 | panicle | Dusk | 6.38 | HC |
| SRR5110457 | panicle | Dawn + 21h | 9.24 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.22 | HC |
| SRR1633182 | panicle | WT | 25.55 | HC |
| SRR1633185 | panicle | WT | 40.48 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 12.94 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 13.81 | HC |
| SRR5126147 | root | "mock,1_day" | 6.60 | HC |
| SRR5126148 | root | "mock,1_day" | 7.16 | HC |
| SRR5126149 | root | "mock,1_day" | 5.86 | HC |
| SRR5126153 | root | "mock,7_days" | 5.65 | HC |
| SRR5126155 | root | "mock,7_days" | 7.03 | HC |
| SRR5126157 | root | "mock,7_days" | 11.07 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 9.13 | HC |
| SRR5126165 | root | "mock,14_days" | 7.45 | HC |
| SRR5126167 | root | "mock,14_days" | 4.41 | HC |
| SRR5126169 | root | "mock,14_days" | 6.58 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 6.06 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.86 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 8.71 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 4.12 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 3.30 | HC |
| SRR1213694 | root | wt | 5.06 | HC |
| SRR1213695 | root | wt | 13.70 | HC |
| SRR4947478 | root | control | 9.46 | HC |
| SRR4947479 | root | control | 10.98 | HC |
| SRR4947480 | root | control | 6.91 | HC |
| SRR4947481 | root | control | 10.15 | HC |
| SRR4947482 | root | Al | 6.65 | HC |
| SRR4947483 | root | Al | 10.55 | HC |
| SRR4947484 | root | Al | 6.09 | HC |
| SRR4947485 | root | Al | 7.13 | HC |
| SRR4947487 | root | control | 11.50 | HC |
| SRR4947488 | root | control | 9.68 | HC |
| SRR4947489 | root | control | 9.30 | HC |
| SRR4947490 | root | Al | 9.40 | HC |
| SRR4947491 | root | Al | 11.93 | HC |
| SRR4947492 | root | Al | 8.01 | HC |
| SRR4947493 | root | Al | 6.51 | HC |
| SRR4947494 | root | control | 12.37 | HC |
| SRR4947497 | root | control | 12.16 | HC |
| SRR4947498 | root | Al | 15.69 | HC |
| SRR4947499 | root | Al | 9.78 | HC |
| SRR4947500 | root | Al | 13.51 | HC |
| SRR4947501 | root | Al | 8.66 | HC |
| SRR4947502 | root | control | 11.10 | HC |
| SRR4947503 | root | control | 12.24 | HC |
| SRR4947504 | root | control | 14.14 | HC |
| SRR4947505 | root | control | 12.82 | HC |
| SRR4947506 | root | Al | 13.71 | HC |
| SRR4947507 | root | Al | 14.70 | HC |
| SRR4947508 | root | Al | 9.97 | HC |
| SRR4947509 | root | Al | 9.62 | HC |
| SRR6502091 | root | 100 mM NaCl | 8.43 | HC |
| SRR6502092 | root | 100 mM NaCl | 6.46 | HC |
| SRR6502093 | root | 100 mM NaCl | 9.35 | HC |
| SRR6502094 | root | control | 8.01 | HC |
| SRR6502095 | root | control | 9.82 | HC |
| SRR6502096 | root | control | 7.73 | HC |
| SRR6502103 | root | 100 mM NaCl | 7.93 | HC |
| SRR6502104 | root | 100 mM NaCl | 13.07 | HC |
| SRR6502105 | root | 100 mM NaCl | 9.92 | HC |
| SRR6502106 | root | control | 7.11 | HC |
| SRR6502107 | root | control | 8.26 | HC |
| SRR6502108 | root | control | 7.75 | HC |
| SRR1740431 | root_elongation_zone | wt | 5.69 | HC |
| SRR1740432 | root_elongation_zone | wt | 8.61 | HC |
| SRR1740433 | root_elongation_zone | wt | 9.73 | HC |
| SRR1740428 | root_meristematic_zone | wt | 7.27 | HC |
| SRR1740429 | root_meristematic_zone | wt | 6.80 | HC |
| SRR1740430 | root_meristematic_zone | wt | 10.04 | HC |
| SRR6441554 | seedling | wild_type | 8.58 | HC |
| SRR6441555 | seedling | wild_type | 7.59 | HC |
| SRR2154086 | seedling | wt | 11.86 | HC |
| SRR2154082 | seedling | wt | 13.23 | HC |
| SRR2154083 | seedling | wt | 11.32 | HC |
| SRR2154084 | seedling | wt | 8.74 | HC |
| SRR2154085 | seedling | wt | 12.87 | HC |
| SRR2154087 | seedling | wt | 12.65 | HC |
| SRR2857719 | seedling | drought_stress_0h | 8.66 | HC |
| SRR2857720 | seedling | drought_stress_1h | 6.83 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.08 | HC |
| SRR358791 | seedling | wt | 8.63 | HC |
| SRR358792 | seedling | wt | 10.20 | HC |
| SRR358793 | seedling | wt | 9.24 | HC |
| SRR358794 | seedling | wt | 11.05 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 8.66 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 7.23 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.79 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 12.96 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.07 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.59 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.70 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 7.12 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 8.31 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 9.50 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 9.90 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 10.39 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 12.13 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 11.10 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 13.31 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 13.54 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 8.13 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 8.27 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 9.26 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 11.19 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 9.46 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 9.73 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 10.95 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 11.05 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 18.28 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 17.87 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 20.10 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 14.80 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 24.66 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 17.88 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 10.68 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 22.53 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 14.77 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 17.84 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 20.00 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 18.07 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 13.70 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 14.91 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 17.98 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 15.26 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 15.79 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 17.06 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 17.48 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 19.93 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 15.13 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 17.83 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 7.53 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 8.18 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 10.96 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 11.56 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 8.13 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 9.18 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 13.37 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 9.70 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 12.86 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 8.61 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 8.06 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 6.39 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 10.72 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 8.15 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 11.26 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 10.05 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 13.71 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 13.16 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 9.86 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 10.30 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 10.64 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 8.81 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 10.17 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 9.16 | HC |