| SRR358795 | callus | wt | 16.96 | HC |
| SRR358796 | callus | wt | 18.34 | HC |
| SRR358797 | callus | wt | 20.73 | HC |
| SRR358798 | callus | wt | 19.76 | HC |
| SRR5560727 | caryopsis | wild_type | 12.13 | HC |
| SRR5560728 | caryopsis | wild_type | 11.14 | HC |
| SRR5560729 | caryopsis | wild_type | 11.43 | HC |
| SRR7265400 | coleoptile | 2dA | 9.73 | HC |
| SRR7265401 | coleoptile | 2dA | 10.65 | HC |
| SRR7265402 | coleoptile | 2dA | 10.35 | HC |
| SRR7265403 | coleoptile | 2dN | 13.32 | HC |
| SRR7265404 | coleoptile | 2dN | 12.55 | HC |
| SRR7265405 | coleoptile | 2dN | 11.96 | HC |
| SRR7265409 | coleoptile | 3dN | 5.82 | HC |
| SRR7265410 | coleoptile | 3dN | 5.68 | HC |
| SRR7265411 | coleoptile | 3dN | 5.07 | HC |
| SRR7265415 | coleoptile | 4dN | 5.55 | HC |
| SRR7265417 | coleoptile | 4dN | 5.80 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 5.11 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 5.27 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 9.45 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 5.73 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 5.37 | HC |
| SRR7265373 | embryo | dry seed 0 h | 35.19 | HC |
| SRR7265374 | embryo | dry seed 0 h | 45.55 | HC |
| SRR7265375 | embryo | dry seed 0 h | 11.28 | HC |
| SRR7265376 | embryo | 1hA | 25.38 | HC |
| SRR7265377 | embryo | 1hA | 30.96 | HC |
| SRR7265378 | embryo | 1hA | 31.62 | HC |
| SRR7265379 | embryo | 1hN | 35.90 | HC |
| SRR7265380 | embryo | 1hN | 31.52 | HC |
| SRR7265381 | embryo | 1hN | 37.44 | HC |
| SRR7265382 | embryo | 3hA | 26.61 | HC |
| SRR7265383 | embryo | 3hA | 34.24 | HC |
| SRR7265384 | embryo | 3hA | 31.84 | HC |
| SRR7265385 | embryo | 3hN | 35.39 | HC |
| SRR7265386 | embryo | 3hN | 30.96 | HC |
| SRR7265387 | embryo | 3hN | 31.70 | HC |
| SRR7265388 | embryo | 12hA | 22.71 | HC |
| SRR7265389 | embryo | 12hA | 20.86 | HC |
| SRR7265390 | embryo | 12hA | 23.19 | HC |
| SRR7265391 | embryo | 12hN | 21.05 | HC |
| SRR7265392 | embryo | 12hN | 18.45 | HC |
| SRR7265393 | embryo | 12hN | 19.06 | HC |
| SRR7265394 | embryo | 24hA | 14.33 | HC |
| SRR7265395 | embryo | 24hA | 17.23 | HC |
| SRR7265396 | embryo | 24hA | 12.59 | HC |
| SRR7265397 | embryo | 24hN | 16.31 | HC |
| SRR7265398 | embryo | 24hN | 15.50 | HC |
| SRR7265399 | embryo | 24hN | 15.04 | HC |
| SRR2338866 | endosprem | control | 6.77 | HC |
| SRR976168 | flag_leaf | wild_type | 6.63 | HC |
| SRR1213690 | flower | wt(flower buds) | 10.81 | HC |
| SRR1213691 | flower | wt | 7.02 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.22 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.60 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.63 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.04 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.37 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.76 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.17 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 9.22 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 7.15 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 7.89 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.68 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.52 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.06 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 5.22 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 5.57 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.39 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.25 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.74 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.63 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.94 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 9.88 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.98 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 7.95 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.97 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.11 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 7.90 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 5.42 | HC |
| SRR504365 | leaf | wt | 4.26 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.50 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.68 | HC |
| SRR8611901 | leaf | Non-inoculated | 3.90 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 4.78 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 4.90 | HC |
| SRR1213693 | leaf | wt | 7.65 | HC |
| SRR6168973 | leaf | none (control) | 5.45 | HC |
| SRR6168974 | leaf | none (control) | 4.96 | HC |
| SRR6168975 | leaf | none (control) | 7.91 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 15.58 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 9.31 | HC |
| SRR8582892 | panicle | PM | 12.54 | HC |
| SRR8582893 | panicle | PM | 5.66 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 4.30 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 18.33 | HC |
| SRR1633182 | panicle | WT | 8.64 | HC |
| SRR1633185 | panicle | WT | 10.59 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 5.89 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.01 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 14.41 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 11.94 | HC |
| SRR5126147 | root | "mock,1_day" | 4.76 | HC |
| SRR5126148 | root | "mock,1_day" | 5.77 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 5.34 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 5.44 | HC |
| SRR5126153 | root | "mock,7_days" | 5.19 | HC |
| SRR5126155 | root | "mock,7_days" | 5.33 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 9.24 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 7.38 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 7.89 | HC |
| SRR5126167 | root | "mock,14_days" | 4.41 | HC |
| SRR5126169 | root | "mock,14_days" | 5.16 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 10.67 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 6.77 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 9.55 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 4.03 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 3.82 | HC |
| SRR1213695 | root | wt | 3.90 | HC |
| SRR4947480 | root | control | 6.01 | HC |
| SRR4947481 | root | control | 6.01 | HC |
| SRR4947484 | root | Al | 6.64 | HC |
| SRR4947485 | root | Al | 6.64 | HC |
| SRR4947488 | root | control | 5.31 | HC |
| SRR4947489 | root | control | 6.22 | HC |
| SRR4947492 | root | Al | 7.76 | HC |
| SRR4947493 | root | Al | 5.05 | HC |
| SRR4947497 | root | control | 6.95 | HC |
| SRR4947500 | root | Al | 8.16 | HC |
| SRR4947501 | root | Al | 13.58 | HC |
| SRR4947504 | root | control | 6.09 | HC |
| SRR4947505 | root | control | 6.86 | HC |
| SRR4947508 | root | Al | 6.08 | HC |
| SRR4947509 | root | Al | 8.71 | HC |
| SRR6502091 | root | 100 mM NaCl | 6.45 | HC |
| SRR6502092 | root | 100 mM NaCl | 5.52 | HC |
| SRR6502093 | root | 100 mM NaCl | 8.44 | HC |
| SRR6502104 | root | 100 mM NaCl | 6.08 | HC |
| SRR6502105 | root | 100 mM NaCl | 8.35 | HC |
| SRR6502107 | root | control | 4.88 | HC |
| SRR6502108 | root | control | 6.77 | HC |
| SRR1740436 | root_differentiation_zone | wt | 5.23 | HC |
| SRR1740431 | root_elongation_zone | wt | 5.85 | HC |
| SRR1740432 | root_elongation_zone | wt | 11.45 | HC |
| SRR1740433 | root_elongation_zone | wt | 9.51 | HC |
| SRR1740428 | root_meristematic_zone | wt | 12.51 | HC |
| SRR1740429 | root_meristematic_zone | wt | 18.88 | HC |
| SRR1740430 | root_meristematic_zone | wt | 25.00 | HC |
| SRR2154086 | seedling | wt | 8.06 | HC |
| SRR2154085 | seedling | wt | 6.61 | HC |
| SRR2154087 | seedling | wt | 7.52 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.86 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 9.54 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 3.57 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 5.56 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 6.38 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.92 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.09 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 26.29 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 29.90 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 28.72 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 46.32 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 25.86 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 34.48 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 39.04 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 30.17 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 29.72 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 32.78 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 30.48 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 35.69 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 31.20 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 33.14 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 34.07 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 36.25 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 32.91 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 32.16 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 37.78 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 30.72 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 37.38 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 32.53 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 23.54 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 13.72 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 16.05 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 8.42 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 12.72 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 9.41 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 8.11 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 9.18 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 14.80 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 13.16 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 8.42 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 14.01 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 11.01 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 15.75 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 5.70 | HC |