| SRR4457250 | 2nd_leaf | DAH4 | 5.38 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 5.89 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 5.79 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 4.96 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 4.01 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 6.96 | HC |
| SRR358796 | callus | wt | 12.12 | HC |
| SRR358797 | callus | wt | 12.36 | HC |
| SRR358798 | callus | wt | 9.55 | HC |
| SRR5560727 | caryopsis | wild_type | 9.59 | HC |
| SRR5560728 | caryopsis | wild_type | 11.50 | HC |
| SRR5560729 | caryopsis | wild_type | 14.02 | HC |
| SRR7265405 | coleoptile | 2dN | 3.94 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 5.20 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 4.73 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 4.27 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 6.43 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 4.46 | HC |
| SRR7265373 | embryo | dry seed 0 h | 5.69 | HC |
| SRR7265374 | embryo | dry seed 0 h | 6.98 | HC |
| SRR7265375 | embryo | dry seed 0 h | 1.99 | HC |
| SRR7265377 | embryo | 1hA | 4.50 | HC |
| SRR7265378 | embryo | 1hA | 4.54 | HC |
| SRR7265379 | embryo | 1hN | 4.67 | HC |
| SRR7265380 | embryo | 1hN | 5.17 | HC |
| SRR7265381 | embryo | 1hN | 5.20 | HC |
| SRR7265382 | embryo | 3hA | 6.99 | HC |
| SRR7265383 | embryo | 3hA | 6.45 | HC |
| SRR7265384 | embryo | 3hA | 6.33 | HC |
| SRR7265387 | embryo | 3hN | 3.82 | HC |
| SRR7265388 | embryo | 12hA | 6.00 | HC |
| SRR7265390 | embryo | 12hA | 5.50 | HC |
| SRR7265392 | embryo | 12hN | 4.84 | HC |
| SRR7265393 | embryo | 12hN | 6.14 | HC |
| SRR7265395 | embryo | 24hA | 5.06 | HC |
| SRR4457232 | flag_leaf | DAH4 | 3.53 | HC |
| SRR4457233 | flag_leaf | DAH4 | 3.37 | HC |
| SRR4457240 | flag_leaf | DAH28 | 4.99 | HC |
| SRR4457241 | flag_leaf | DAH28 | 4.02 | HC |
| SRR4457242 | flag_leaf | DAH28 | 5.30 | HC |
| SRR4457246 | flag_leaf | DAH44 | 5.59 | HC |
| SRR4457248 | flag_leaf | DAH44 | 6.43 | HC |
| SRR1213690 | flower | wt(flower buds) | 8.63 | HC |
| SRR1213691 | flower | wt | 6.78 | HC |
| SRR8060835 | leaf | wild_type | 5.78 | HC |
| SRR8060836 | leaf | wild_type | 10.28 | HC |
| SRR8060837 | leaf | wild_type | 6.12 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 93.41 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 96.71 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 137.90 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 195.21 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 133.90 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 127.68 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 160.21 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 168.05 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 136.24 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 35.70 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 95.13 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 106.01 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 150.72 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 103.44 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 119.86 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 47.49 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 154.44 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 147.94 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 61.99 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 98.20 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 102.35 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.40 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 11.16 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 13.22 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 11.93 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 11.18 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 9.22 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 13.11 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 12.14 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 12.83 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 10.20 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 10.54 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.14 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 12.10 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 11.81 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 12.33 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 6.97 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 6.67 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 7.68 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 7.62 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 6.97 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 6.67 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 7.68 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 7.62 | HC |
| SRR1761528 | leaf | drought | 6.97 | HC |
| SRR1761529 | leaf | drought | 6.67 | HC |
| SRR1761530 | leaf | control | 7.68 | HC |
| SRR1761531 | leaf | control | 7.62 | HC |
| SRR504365 | leaf | wt | 8.14 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.57 | HC |
| SRR6417969 | leaf | H2O_control | 4.40 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 6.22 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 5.50 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 6.23 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 5.98 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 6.81 | HC |
| SRR8611900 | leaf | Non-inoculated | 6.67 | HC |
| SRR8611901 | leaf | Non-inoculated | 7.56 | HC |
| SRR8611902 | leaf | Non-inoculated | 6.39 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 4.17 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.49 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 6.52 | HC |
| SRR1213692 | leaf | wt | 10.98 | HC |
| SRR1213693 | leaf | wt | 10.79 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 7.98 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 8.07 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 8.62 | HC |
| SRR6502088 | leaf | control | 6.36 | HC |
| SRR6502089 | leaf | control | 5.50 | HC |
| SRR6502090 | leaf | control | 4.68 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 7.30 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 6.56 | HC |
| SRR6502100 | leaf | control | 5.42 | HC |
| SRR6502101 | leaf | control | 4.38 | HC |
| SRR8582891 | panicle | PM | 9.74 | HC |
| SRR8582892 | panicle | PM | 13.28 | HC |
| SRR8582893 | panicle | PM | 7.15 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.35 | HC |
| SRR1633182 | panicle | WT | 9.44 | HC |
| SRR1633185 | panicle | WT | 13.44 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 11.68 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 8.60 | HC |
| SRR5126147 | root | "mock,1_day" | 7.05 | HC |
| SRR5126148 | root | "mock,1_day" | 6.64 | HC |
| SRR5126149 | root | "mock,1_day" | 8.76 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 11.62 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 12.30 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 9.51 | HC |
| SRR5126153 | root | "mock,7_days" | 7.80 | HC |
| SRR5126155 | root | "mock,7_days" | 8.54 | HC |
| SRR5126157 | root | "mock,7_days" | 11.41 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 11.36 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 12.23 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 11.45 | HC |
| SRR5126165 | root | "mock,14_days" | 12.63 | HC |
| SRR5126167 | root | "mock,14_days" | 5.95 | HC |
| SRR5126169 | root | "mock,14_days" | 9.74 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 9.89 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 12.23 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 11.01 | HC |
| SRR1213694 | root | wt | 4.93 | HC |
| SRR1213695 | root | wt | 10.23 | HC |
| SRR4947505 | root | control | 5.78 | HC |
| SRR6502091 | root | 100 mM NaCl | 8.42 | HC |
| SRR6502092 | root | 100 mM NaCl | 8.24 | HC |
| SRR6502093 | root | 100 mM NaCl | 9.95 | HC |
| SRR6502103 | root | 100 mM NaCl | 7.51 | HC |
| SRR6502104 | root | 100 mM NaCl | 7.76 | HC |
| SRR6502105 | root | 100 mM NaCl | 7.14 | HC |
| SRR6502107 | root | control | 4.66 | HC |
| SRR6502108 | root | control | 5.98 | HC |
| SRR1740436 | root_differentiation_zone | wt | 3.90 | HC |
| SRR1740432 | root_elongation_zone | wt | 4.02 | HC |
| SRR1740429 | root_meristematic_zone | wt | 5.09 | HC |
| SRR1740430 | root_meristematic_zone | wt | 6.37 | HC |
| SRR6441554 | seedling | wild_type | 4.67 | HC |
| SRR2154086 | seedling | wt | 7.73 | HC |
| SRR2154085 | seedling | wt | 7.13 | HC |
| SRR2154087 | seedling | wt | 7.15 | HC |
| SRR3098741 | seedling | wt | 4.30 | HC |
| SRR3098742 | seedling | wt | 3.74 | HC |
| SRR3098743 | seedling | wt | 3.55 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.37 | HC |
| SRR358791 | seedling | wt | 9.67 | HC |
| SRR358792 | seedling | wt | 10.35 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.97 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.97 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 3.06 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 4.46 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.08 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.84 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.23 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 5.42 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.17 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.78 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.40 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.83 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.13 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.83 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.68 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.63 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 7.33 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 9.70 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 9.53 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 14.51 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 4.78 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 5.22 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 4.47 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 6.27 | HC |