| SRR5560727 | caryopsis | wild_type | 22.65 | HC |
| SRR5560728 | caryopsis | wild_type | 24.26 | HC |
| SRR5560729 | caryopsis | wild_type | 16.43 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 30.32 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 25.78 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 16.01 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 22.59 | HC |
| SRR7265406 | coleoptile | 3dA | 3.86 | HC |
| SRR7265407 | coleoptile | 3dA | 3.29 | HC |
| SRR7265408 | coleoptile | 3dA | 3.02 | HC |
| SRR7265410 | coleoptile | 3dN | 3.84 | HC |
| SRR7265411 | coleoptile | 3dN | 3.67 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 5.45 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 5.73 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 4.44 | HC |
| SRR2338866 | endosprem | control | 6.00 | HC |
| SRR1213691 | flower | wt | 4.46 | HC |
| SRR8060837 | leaf | wild_type | 3.12 | HC |
| SRR8240824 | leaf | wild_type | 4.55 | HC |
| SRR8240825 | leaf | wild_type | 5.73 | HC |
| SRR8240818 | leaf | wild_type | 5.58 | HC |
| SRR8240819 | leaf | wild_type | 4.41 | HC |
| SRR8240820 | leaf | wild_type | 4.84 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 20.56 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 31.44 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 10.80 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 20.54 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.62 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.73 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.38 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.37 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 9.66 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.71 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.36 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 10.48 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.18 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 10.59 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 6.17 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 13.01 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 12.36 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.05 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.00 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.11 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.56 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 12.13 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 8.88 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.27 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.40 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.79 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 23.26 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 24.93 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 23.26 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 24.93 | HC |
| SRR1761528 | leaf | drought | 23.26 | HC |
| SRR1761529 | leaf | drought | 24.93 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.71 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.74 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 6.80 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 7.55 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 4.57 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 4.09 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 4.44 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 6.26 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 9.29 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 9.46 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 5.51 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 9.94 | HC |
| SRR8611900 | leaf | Non-inoculated | 13.55 | HC |
| SRR8611901 | leaf | Non-inoculated | 13.14 | HC |
| SRR8611902 | leaf | Non-inoculated | 12.79 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 32.97 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 29.31 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 29.86 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.86 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.68 | HC |
| SRR6168973 | leaf | none (control) | 26.74 | HC |
| SRR6168974 | leaf | none (control) | 29.79 | HC |
| SRR6168975 | leaf | none (control) | 13.72 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 19.95 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 23.36 | HC |
| SRR6168979 | leaf | none (control) | 2.79 | HC |
| SRR6168980 | leaf | none (control) | 3.94 | HC |
| SRR6168981 | leaf | none (control) | 14.35 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 10.03 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 20.18 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 12.45 | HC |
| SRR8582888 | panicle | AM | 4.20 | HC |
| SRR8582889 | panicle | AM | 3.50 | HC |
| SRR8582890 | panicle | AM | 2.69 | HC |
| SRR8582891 | panicle | PM | 15.43 | HC |
| SRR8582893 | panicle | PM | 16.41 | HC |
| SRR4947496 | root | control | 6.98 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 24.16 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 24.02 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 20.68 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 19.90 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 21.13 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 28.61 | HC |
| SRR5126147 | root | "mock,1_day" | 6.99 | HC |
| SRR5126148 | root | "mock,1_day" | 3.95 | HC |
| SRR5126149 | root | "mock,1_day" | 7.63 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 9.69 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 8.85 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 6.48 | HC |
| SRR5126169 | root | "mock,14_days" | 6.04 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 4.83 | HC |
| SRR4947489 | root | control | 7.32 | HC |
| SRR4947497 | root | control | 7.72 | HC |
| SRR4947504 | root | control | 7.44 | HC |
| SRR4947508 | root | Al | 5.41 | HC |
| SRR6502104 | root | 100 mM NaCl | 7.89 | HC |
| SRR6502105 | root | 100 mM NaCl | 7.37 | HC |
| SRR6502107 | root | control | 5.53 | HC |
| SRR1740434 | root_differentiation_zone | wt | 14.55 | HC |
| SRR1740435 | root_differentiation_zone | wt | 2.95 | HC |
| SRR6441554 | seedling | wild_type | 12.17 | HC |
| SRR6441555 | seedling | wild_type | 21.48 | HC |
| SRR2154085 | seedling | wt | 7.83 | HC |
| SRR3098741 | seedling | wt | 10.53 | HC |
| SRR3098742 | seedling | wt | 5.58 | HC |
| SRR3098743 | seedling | wt | 6.23 | HC |
| SRR2857720 | seedling | drought_stress_1h | 4.84 | HC |
| SRR2857721 | seedling | drought_stress_6h | 5.74 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 11.54 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 3.02 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 3.11 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 9.12 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 8.18 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.46 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.73 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.85 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.14 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.21 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.25 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.71 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.89 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.26 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.27 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 9.50 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 10.71 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 10.69 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 13.42 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 11.13 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 14.72 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 10.61 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 10.68 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 9.91 | HC |