| SRR3745126 | anther | wt | 7.70 | HC |
| SRR3745127 | anther | wt | 5.71 | HC |
| SRR4947495 | root | control | 15.39 | HC |
| SRR7265400 | coleoptile | 2dA | 4.57 | HC |
| SRR7265401 | coleoptile | 2dA | 3.99 | HC |
| SRR7265402 | coleoptile | 2dA | 4.76 | HC |
| SRR7265403 | coleoptile | 2dN | 5.76 | HC |
| SRR7265404 | coleoptile | 2dN | 5.45 | HC |
| SRR7265405 | coleoptile | 2dN | 6.30 | HC |
| SRR7265407 | coleoptile | 3dA | 3.39 | HC |
| SRR7265409 | coleoptile | 3dN | 7.62 | HC |
| SRR7265410 | coleoptile | 3dN | 6.18 | HC |
| SRR7265411 | coleoptile | 3dN | 6.99 | HC |
| SRR7265413 | coleoptile | 4dA | 5.49 | HC |
| SRR7265414 | coleoptile | 4dA | 5.09 | HC |
| SRR7265415 | coleoptile | 4dN | 8.08 | HC |
| SRR7265416 | coleoptile | 4dN | 6.98 | HC |
| SRR7265417 | coleoptile | 4dN | 6.35 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 6.01 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 4.79 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 4.34 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 4.52 | HC |
| SRR7265389 | embryo | 12hA | 7.41 | HC |
| SRR7265391 | embryo | 12hN | 6.61 | HC |
| SRR7265392 | embryo | 12hN | 5.38 | HC |
| SRR7265393 | embryo | 12hN | 5.10 | HC |
| SRR7265396 | embryo | 24hA | 5.27 | HC |
| SRR7265397 | embryo | 24hN | 7.54 | HC |
| SRR7265398 | embryo | 24hN | 6.99 | HC |
| SRR7265399 | embryo | 24hN | 7.62 | HC |
| SRR2338867 | endosprem | control | 2.79 | HC |
| SRR4457231 | flag_leaf | DAH4 | 3.62 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.26 | HC |
| SRR8060836 | leaf | wild_type | 4.04 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.30 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.50 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.28 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 10.64 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 11.42 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.90 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.08 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 9.69 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.46 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 7.41 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 10.54 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 10.56 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.92 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 9.52 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 6.49 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 10.50 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 8.04 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.19 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.30 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 10.61 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.25 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.59 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.36 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.14 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 11.31 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 9.71 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.65 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 11.23 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.10 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.78 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 11.27 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.95 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 5.55 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 5.24 | HC |
| SRR6417967 | leaf | H2O_control | 5.16 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 4.77 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 3.50 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 5.28 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 4.59 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 5.64 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 5.21 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 6.56 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 5.85 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 6.29 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 4.49 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.82 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.47 | HC |
| SRR1213693 | leaf | wt | 4.36 | HC |
| SRR5856928 | leaf | control | 2.58 | HC |
| SRR5856929 | leaf | control | 2.65 | HC |
| SRR5856933 | leaf | control | 3.40 | HC |
| SRR5856934 | leaf | control | 2.93 | HC |
| SRR5856935 | leaf | control | 2.95 | HC |
| SRR5856937 | leaf | salt | 2.19 | HC |
| SRR5856938 | leaf | salt | 2.24 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 8.03 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 8.40 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 10.35 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 7.27 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 6.93 | HC |
| SRR8582889 | panicle | AM | 2.50 | HC |
| SRR8582890 | panicle | AM | 3.80 | HC |
| SRR5110429 | panicle | Dawn | 11.29 | HC |
| SRR5110430 | panicle | Dawn | 20.25 | HC |
| SRR5110431 | panicle | Dawn | 12.65 | HC |
| SRR4947496 | root | control | 6.30 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 13.59 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 7.02 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 7.37 | HC |
| SRR5110437 | panicle | Dawn + 7h | 5.72 | HC |
| SRR5110438 | panicle | Dawn + 7h | 8.76 | HC |
| SRR5110439 | panicle | Dawn + 7h | 13.27 | HC |
| SRR5110440 | panicle | Dawn + 7h | 7.49 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 6.73 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.65 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 4.55 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 7.35 | HC |
| SRR5110445 | panicle | Dusk | 8.97 | HC |
| SRR5110446 | panicle | Dusk | 4.83 | HC |
| SRR5110447 | panicle | Dusk | 6.34 | HC |
| SRR5110448 | panicle | Dusk | 6.69 | HC |
| SRR5110449 | panicle | Dawn + 14h | 10.77 | HC |
| SRR5110450 | panicle | Dawn + 14h | 5.38 | HC |
| SRR5110451 | panicle | Dawn + 14h | 8.59 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 4.63 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.17 | HC |
| SRR5110457 | panicle | Dawn + 21h | 5.31 | HC |
| SRR5110458 | panicle | Dawn + 21h | 6.99 | HC |
| SRR5110459 | panicle | Dawn + 21h | 4.84 | HC |
| SRR5110460 | panicle | Dawn + 21h | 10.62 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.06 | HC |
| SRR1633182 | panicle | WT | 6.01 | HC |
| SRR1633185 | panicle | WT | 9.31 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 4.52 | HC |
| SRR5126153 | root | "mock,7_days" | 4.63 | HC |
| SRR5126155 | root | "mock,7_days" | 5.11 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 6.08 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 5.61 | HC |
| SRR5126169 | root | "mock,14_days" | 5.67 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 7.59 | HC |
| SRR1213695 | root | wt | 6.68 | HC |
| SRR4947478 | root | control | 9.35 | HC |
| SRR4947479 | root | control | 9.82 | HC |
| SRR4947480 | root | control | 5.73 | HC |
| SRR4947482 | root | Al | 4.73 | HC |
| SRR4947483 | root | Al | 8.05 | HC |
| SRR4947484 | root | Al | 7.41 | HC |
| SRR4947485 | root | Al | 5.28 | HC |
| SRR4947487 | root | control | 6.90 | HC |
| SRR4947489 | root | control | 7.92 | HC |
| SRR4947490 | root | Al | 10.96 | HC |
| SRR4947491 | root | Al | 17.88 | HC |
| SRR4947492 | root | Al | 7.69 | HC |
| SRR4947494 | root | control | 7.75 | HC |
| SRR4947497 | root | control | 8.99 | HC |
| SRR4947498 | root | Al | 25.98 | HC |
| SRR4947499 | root | Al | 13.33 | HC |
| SRR4947500 | root | Al | 7.76 | HC |
| SRR4947501 | root | Al | 12.04 | HC |
| SRR4947502 | root | control | 17.50 | HC |
| SRR4947503 | root | control | 11.69 | HC |
| SRR4947504 | root | control | 5.58 | HC |
| SRR4947505 | root | control | 6.83 | HC |
| SRR4947506 | root | Al | 8.90 | HC |
| SRR4947507 | root | Al | 18.89 | HC |
| SRR4947508 | root | Al | 6.91 | HC |
| SRR4947509 | root | Al | 6.97 | HC |
| SRR6502093 | root | 100 mM NaCl | 5.94 | HC |
| SRR6502094 | root | control | 5.48 | HC |
| SRR1740436 | root_differentiation_zone | wt | 7.02 | HC |
| SRR1740432 | root_elongation_zone | wt | 4.27 | HC |
| SRR1740433 | root_elongation_zone | wt | 3.47 | HC |
| SRR2154086 | seedling | wt | 6.28 | HC |
| SRR2154082 | seedling | wt | 4.85 | HC |
| SRR2154083 | seedling | wt | 5.35 | HC |
| SRR2154084 | seedling | wt | 5.38 | HC |
| SRR2154085 | seedling | wt | 5.55 | HC |
| SRR2154087 | seedling | wt | 7.08 | HC |
| SRR3098743 | seedling | wt | 2.61 | HC |
| SRR2857720 | seedling | drought_stress_1h | 5.08 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.30 | HC |
| SRR358791 | seedling | wt | 12.23 | HC |
| SRR358792 | seedling | wt | 11.82 | HC |
| SRR358793 | seedling | wt | 26.33 | HC |
| SRR358794 | seedling | wt | 21.29 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 9.32 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 11.57 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 10.82 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 11.93 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 18.21 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 12.50 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 10.30 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 21.39 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 13.56 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 11.38 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 16.84 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 16.00 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.78 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 8.59 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 8.40 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 7.07 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 9.99 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.50 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 4.16 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 8.44 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 7.75 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 9.25 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 11.97 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 11.11 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 8.87 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 13.95 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 9.79 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 8.66 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 9.77 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 9.94 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 10.07 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 14.35 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 11.54 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 8.84 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 12.16 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 10.53 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 5.13 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 6.41 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 4.65 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.42 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.47 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 5.73 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 4.27 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 4.34 | HC |