| SRR4457251 | 2nd_leaf | DAH4 | 4.57 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 5.96 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 5.02 | HC |
| SRR3745125 | anther | wt | 9.68 | HC |
| SRR3745126 | anther | wt | 17.61 | HC |
| SRR3745127 | anther | wt | 15.14 | HC |
| SRR5560727 | caryopsis | wild_type | 39.70 | HC |
| SRR5560728 | caryopsis | wild_type | 25.80 | HC |
| SRR5560729 | caryopsis | wild_type | 25.02 | HC |
| SRR7265376 | embryo | 1hA | 5.52 | HC |
| SRR7265377 | embryo | 1hA | 4.21 | HC |
| SRR7265378 | embryo | 1hA | 4.81 | HC |
| SRR7265380 | embryo | 1hN | 4.74 | HC |
| SRR7265381 | embryo | 1hN | 3.42 | HC |
| SRR7265384 | embryo | 3hA | 4.49 | HC |
| SRR7265385 | embryo | 3hN | 4.50 | HC |
| SRR7265386 | embryo | 3hN | 5.80 | HC |
| SRR7265387 | embryo | 3hN | 5.03 | HC |
| SRR976168 | flag_leaf | wild_type | 4.41 | HC |
| SRR4457231 | flag_leaf | DAH4 | 3.86 | HC |
| SRR8060835 | leaf | wild_type | 6.55 | HC |
| SRR8060836 | leaf | wild_type | 13.44 | HC |
| SRR8060837 | leaf | wild_type | 9.10 | HC |
| SRR8240819 | leaf | wild_type | 2.96 | HC |
| SRR8240820 | leaf | wild_type | 3.06 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 18.42 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 14.64 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 14.90 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 17.06 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 19.87 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 9.75 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 15.66 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 22.08 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 9.99 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 14.30 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 17.38 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 14.55 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 17.84 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 7.82 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 17.88 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 13.29 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.12 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 14.08 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 12.08 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.54 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 11.41 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.38 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 10.63 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 17.12 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 7.65 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.02 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 11.18 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 10.63 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 13.20 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 14.96 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 6.01 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 13.59 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 14.61 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 13.59 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 14.61 | HC |
| SRR1761528 | leaf | drought | 13.59 | HC |
| SRR1761529 | leaf | drought | 14.61 | HC |
| SRR504365 | leaf | wt | 5.18 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 8.05 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 11.72 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.60 | HC |
| SRR6417967 | leaf | H2O_control | 3.95 | HC |
| SRR6417968 | leaf | H2O_control | 3.62 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 6.24 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 7.82 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 23.94 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 25.44 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 4.01 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 7.68 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 21.27 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 18.13 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 6.73 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 26.99 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 8.77 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 27.64 | HC |
| SRR8611900 | leaf | Non-inoculated | 11.76 | HC |
| SRR8611901 | leaf | Non-inoculated | 12.06 | HC |
| SRR8611902 | leaf | Non-inoculated | 13.09 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 46.15 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 47.77 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 48.78 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 4.60 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 6.01 | HC |
| SRR1213692 | leaf | wt | 9.28 | HC |
| SRR1213693 | leaf | wt | 14.50 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 4.82 | HC |
| SRR6502090 | leaf | control | 4.12 | HC |
| SRR5856927 | leaf | control | 8.02 | HC |
| SRR5856928 | leaf | control | 8.79 | HC |
| SRR5856929 | leaf | control | 7.26 | HC |
| SRR5856930 | leaf | salt | 30.07 | HC |
| SRR5856931 | leaf | salt | 19.74 | HC |
| SRR5856932 | leaf | salt | 22.89 | HC |
| SRR5856933 | leaf | control | 8.54 | HC |
| SRR5856934 | leaf | control | 7.26 | HC |
| SRR5856935 | leaf | control | 9.82 | HC |
| SRR5856936 | leaf | salt | 33.11 | HC |
| SRR5856937 | leaf | salt | 30.45 | HC |
| SRR5856938 | leaf | salt | 36.44 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 9.42 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 10.48 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 7.75 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 8.20 | HC |
| SRR6168974 | leaf | none (control) | 9.44 | HC |
| SRR6168975 | leaf | none (control) | 17.87 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 12.63 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 31.11 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 7.61 | HC |
| SRR6168979 | leaf | none (control) | 18.05 | HC |
| SRR6168980 | leaf | none (control) | 40.93 | HC |
| SRR6168981 | leaf | none (control) | 88.45 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 135.11 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 92.82 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 138.66 | HC |
| SRR8582889 | panicle | AM | 1.73 | HC |
| SRR8582893 | panicle | PM | 5.09 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 6.95 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 6.33 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 6.93 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 6.22 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 5.79 | HC |
| SRR5110445 | panicle | Dusk | 6.30 | HC |
| SRR5110446 | panicle | Dusk | 11.24 | HC |
| SRR5110447 | panicle | Dusk | 10.04 | HC |
| SRR5110448 | panicle | Dusk | 7.63 | HC |
| SRR5110449 | panicle | Dawn + 14h | 6.74 | HC |
| SRR5110451 | panicle | Dawn + 14h | 7.76 | HC |
| SRR5110452 | panicle | Dawn + 14h | 6.32 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.28 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.57 | HC |
| SRR5110458 | panicle | Dawn + 21h | 4.09 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.07 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 6.11 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 44.04 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 31.75 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 27.44 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 25.02 | HC |
| SRR5126147 | root | "mock,1_day" | 6.21 | HC |
| SRR5126148 | root | "mock,1_day" | 6.17 | HC |
| SRR5126149 | root | "mock,1_day" | 6.56 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 10.11 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 11.48 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 6.84 | HC |
| SRR5126155 | root | "mock,7_days" | 7.91 | HC |
| SRR5126157 | root | "mock,7_days" | 7.97 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 8.03 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.65 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 5.85 | HC |
| SRR5126167 | root | "mock,14_days" | 8.83 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 6.45 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 9.88 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 5.64 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 3.32 | HC |
| SRR1213694 | root | wt | 5.56 | HC |
| SRR1213695 | root | wt | 9.64 | HC |
| SRR1740434 | root_differentiation_zone | wt | 7.31 | HC |
| SRR1740435 | root_differentiation_zone | wt | 5.20 | HC |
| SRR1740436 | root_differentiation_zone | wt | 4.69 | HC |
| SRR1740431 | root_elongation_zone | wt | 6.65 | HC |
| SRR1740432 | root_elongation_zone | wt | 4.50 | HC |
| SRR1740433 | root_elongation_zone | wt | 4.98 | HC |
| SRR6441554 | seedling | wild_type | 7.83 | HC |
| SRR6441555 | seedling | wild_type | 12.73 | HC |
| SRR2857721 | seedling | drought_stress_6h | 6.16 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 9.93 | HC |
| SRR358791 | seedling | wt | 9.89 | HC |
| SRR358792 | seedling | wt | 9.33 | HC |
| SRR358793 | seedling | wt | 14.59 | HC |
| SRR358794 | seedling | wt | 16.39 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.34 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 15.52 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 8.72 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 8.72 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 15.05 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 16.45 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 21.00 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 19.23 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 15.51 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 16.37 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 21.97 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 17.57 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 19.09 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.45 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.22 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.11 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.73 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.84 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.21 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 9.85 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 12.45 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 10.30 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 8.84 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 10.44 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 3.46 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 4.02 | HC |