| SRR358796 | callus | wt | 10.25 | HC |
| SRR5560727 | caryopsis | wild_type | 42.31 | HC |
| SRR5560728 | caryopsis | wild_type | 20.69 | HC |
| SRR5560729 | caryopsis | wild_type | 17.55 | HC |
| SRR4947495 | root | control | 10.75 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 21.24 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 19.76 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 17.12 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 6.11 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 11.47 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 10.19 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 14.07 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 14.01 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 16.37 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 15.31 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 16.88 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 12.10 | HC |
| SRR2338867 | endosprem | control | 5.72 | HC |
| SRR2338868 | endosprem | high_temperature | 6.22 | HC |
| SRR2338869 | endosprem | high_temperature | 5.00 | HC |
| SRR4457231 | flag_leaf | DAH4 | 4.08 | HC |
| SRR4457235 | flag_leaf | DAH12 | 3.97 | HC |
| SRR4457236 | flag_leaf | DAH12 | 4.29 | HC |
| SRR4457237 | flag_leaf | DAH20 | 3.49 | HC |
| SRR4457238 | flag_leaf | DAH20 | 5.14 | HC |
| SRR1213691 | flower | wt | 6.33 | HC |
| SRR8060835 | leaf | wild_type | 11.34 | HC |
| SRR8060836 | leaf | wild_type | 7.43 | HC |
| SRR8060837 | leaf | wild_type | 12.73 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 5.44 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 6.81 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 4.75 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 10.17 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 6.75 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.70 | HC |
| SRR8611900 | leaf | Non-inoculated | 33.34 | HC |
| SRR8611901 | leaf | Non-inoculated | 30.14 | HC |
| SRR8611902 | leaf | Non-inoculated | 34.29 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 43.87 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 40.33 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 47.80 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 12.20 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 10.87 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 4.72 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 5.49 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 6.10 | HC |
| SRR5856927 | leaf | control | 30.30 | HC |
| SRR5856928 | leaf | control | 27.51 | HC |
| SRR5856929 | leaf | control | 34.84 | HC |
| SRR5856930 | leaf | salt | 18.37 | HC |
| SRR5856931 | leaf | salt | 16.83 | HC |
| SRR5856932 | leaf | salt | 11.93 | HC |
| SRR5856933 | leaf | control | 28.64 | HC |
| SRR5856934 | leaf | control | 22.68 | HC |
| SRR5856935 | leaf | control | 25.13 | HC |
| SRR5856936 | leaf | salt | 17.38 | HC |
| SRR5856937 | leaf | salt | 18.44 | HC |
| SRR5856938 | leaf | salt | 11.46 | HC |
| SRR6168973 | leaf | none (control) | 56.48 | HC |
| SRR6168974 | leaf | none (control) | 53.47 | HC |
| SRR6168975 | leaf | none (control) | 60.25 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 48.39 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 56.16 | HC |
| SRR6168980 | leaf | none (control) | 2.98 | HC |
| SRR6168981 | leaf | none (control) | 9.06 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 9.65 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 9.66 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 8.03 | HC |
| SRR8582888 | panicle | AM | 3.71 | HC |
| SRR8582889 | panicle | AM | 4.23 | HC |
| SRR8582890 | panicle | AM | 2.60 | HC |
| SRR8582893 | panicle | PM | 6.75 | HC |
| SRR4947496 | root | control | 9.60 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.33 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 3.28 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 6.59 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 6.40 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 21.31 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 17.11 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 40.51 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 74.20 | HC |
| SRR5126147 | root | "mock,1_day" | 4.84 | HC |
| SRR5126148 | root | "mock,1_day" | 6.04 | HC |
| SRR5126149 | root | "mock,1_day" | 9.59 | HC |
| SRR5126153 | root | "mock,7_days" | 5.16 | HC |
| SRR5126155 | root | "mock,7_days" | 9.93 | HC |
| SRR5126157 | root | "mock,7_days" | 10.08 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 5.95 | HC |
| SRR5126169 | root | "mock,14_days" | 9.74 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.42 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 6.69 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 7.64 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 16.28 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 23.26 | HC |
| SRR4947478 | root | control | 7.35 | HC |
| SRR4947479 | root | control | 6.77 | HC |
| SRR4947480 | root | control | 7.34 | HC |
| SRR4947481 | root | control | 9.62 | HC |
| SRR4947483 | root | Al | 4.18 | HC |
| SRR4947485 | root | Al | 6.59 | HC |
| SRR4947487 | root | control | 9.99 | HC |
| SRR4947488 | root | control | 8.98 | HC |
| SRR4947489 | root | control | 12.81 | HC |
| SRR4947490 | root | Al | 6.27 | HC |
| SRR4947491 | root | Al | 7.58 | HC |
| SRR4947493 | root | Al | 8.32 | HC |
| SRR4947494 | root | control | 5.97 | HC |
| SRR4947497 | root | control | 15.11 | HC |
| SRR4947498 | root | Al | 6.80 | HC |
| SRR4947499 | root | Al | 6.14 | HC |
| SRR4947500 | root | Al | 6.26 | HC |
| SRR4947501 | root | Al | 9.39 | HC |
| SRR4947502 | root | control | 9.57 | HC |
| SRR4947503 | root | control | 5.81 | HC |
| SRR4947504 | root | control | 5.83 | HC |
| SRR4947505 | root | control | 7.80 | HC |
| SRR4947506 | root | Al | 6.68 | HC |
| SRR4947507 | root | Al | 6.34 | HC |
| SRR6502091 | root | 100 mM NaCl | 11.86 | HC |
| SRR6502092 | root | 100 mM NaCl | 17.94 | HC |
| SRR6502093 | root | 100 mM NaCl | 13.15 | HC |
| SRR6502094 | root | control | 15.52 | HC |
| SRR6502095 | root | control | 13.63 | HC |
| SRR6502096 | root | control | 11.81 | HC |
| SRR6502103 | root | 100 mM NaCl | 8.38 | HC |
| SRR6502104 | root | 100 mM NaCl | 13.63 | HC |
| SRR6502105 | root | 100 mM NaCl | 18.33 | HC |
| SRR6502106 | root | control | 12.72 | HC |
| SRR6502107 | root | control | 10.52 | HC |
| SRR6502108 | root | control | 8.44 | HC |
| SRR1740434 | root_differentiation_zone | wt | 4.27 | HC |
| SRR1740428 | root_meristematic_zone | wt | 6.27 | HC |
| SRR1740429 | root_meristematic_zone | wt | 7.56 | HC |
| SRR1740430 | root_meristematic_zone | wt | 7.30 | HC |
| SRR6441554 | seedling | wild_type | 12.48 | HC |
| SRR6441555 | seedling | wild_type | 10.24 | HC |
| SRR3098741 | seedling | wt | 7.65 | HC |
| SRR3098742 | seedling | wt | 10.93 | HC |
| SRR3098743 | seedling | wt | 10.28 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.95 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 5.51 | HC |
| SRR1944583 | seedling | no_treatment | 7.44 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.14 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 7.23 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.62 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 16.13 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.84 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.86 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.19 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 9.88 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 4.07 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 5.09 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 9.47 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 7.23 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 14.94 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 15.22 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 11.39 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 13.37 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 10.71 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.85 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 8.53 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 9.08 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 3.57 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.10 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 13.29 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 9.77 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 21.61 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 19.51 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 22.38 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 49.41 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 45.66 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 41.83 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 19.82 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 21.26 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 17.40 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 19.30 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 23.59 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 14.08 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 16.57 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 19.32 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 26.07 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 20.49 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 26.91 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 16.32 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 20.12 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 26.67 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 24.73 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 28.21 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 27.18 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 12.59 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 13.72 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 12.82 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 22.59 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 17.97 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 15.21 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 46.30 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 47.46 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 53.10 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 35.16 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 42.26 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 39.39 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 33.98 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 36.11 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 47.96 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.83 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 3.64 | HC |