| SRR4457249 | 2nd_leaf | DAH4 | 5.83 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 5.96 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 5.58 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 4.21 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 4.37 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 4.48 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.77 | HC |
| SRR358797 | callus | wt | 9.93 | HC |
| SRR358798 | callus | wt | 11.24 | HC |
| SRR6320473 | carpel | wt | 10.36 | HC |
| SRR6320498 | carpel | wt | 14.12 | HC |
| SRR5560729 | caryopsis | wild_type | 6.03 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.53 | HC |
| SRR2338866 | endosprem | control | 7.53 | HC |
| SRR2338867 | endosprem | control | 3.39 | HC |
| SRR2338869 | endosprem | high_temperature | 4.41 | HC |
| SRR4457231 | flag_leaf | DAH4 | 4.23 | HC |
| SRR4457232 | flag_leaf | DAH4 | 5.85 | HC |
| SRR4457233 | flag_leaf | DAH4 | 5.92 | HC |
| SRR4457246 | flag_leaf | DAH44 | 4.82 | HC |
| SRR1213690 | flower | wt(flower buds) | 6.90 | HC |
| SRR1213691 | flower | wt | 5.11 | HC |
| SRR8060835 | leaf | wild_type | 3.71 | HC |
| SRR8060836 | leaf | wild_type | 8.05 | HC |
| SRR8060837 | leaf | wild_type | 3.26 | HC |
| SRR8240824 | leaf | wild_type | 3.55 | HC |
| SRR8240825 | leaf | wild_type | 2.60 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.85 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 5.78 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 5.63 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 8.37 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 8.05 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.71 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.89 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.67 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 9.74 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.48 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.66 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 9.81 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 12.86 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 9.29 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.77 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 10.68 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 6.47 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 8.50 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 8.14 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.97 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.34 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.49 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.75 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.89 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 12.22 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 12.26 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.88 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 8.49 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 12.85 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.87 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.50 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.08 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.10 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 7.96 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 8.57 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 7.31 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 10.96 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 10.54 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 10.96 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 10.54 | HC |
| SRR1761528 | leaf | drought | 10.96 | HC |
| SRR1761529 | leaf | drought | 10.54 | HC |
| SRR504365 | leaf | wt | 12.96 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 9.30 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 7.37 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 7.95 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 6.49 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 4.08 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 9.90 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 9.56 | HC |
| SRR8611900 | leaf | Non-inoculated | 5.39 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.86 | HC |
| SRR8611902 | leaf | Non-inoculated | 5.11 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 4.63 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 5.14 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 5.18 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 6.42 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.82 | HC |
| SRR1213692 | leaf | wt | 15.83 | HC |
| SRR1213693 | leaf | wt | 10.69 | HC |
| SRR6168981 | leaf | none (control) | 2.71 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.75 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 5.03 | HC |
| SRR8582888 | panicle | AM | 4.77 | HC |
| SRR8582889 | panicle | AM | 2.31 | HC |
| SRR8582890 | panicle | AM | 3.26 | HC |
| SRR8582891 | panicle | PM | 6.81 | HC |
| SRR8582893 | panicle | PM | 6.62 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.25 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.38 | HC |
| SRR5110448 | panicle | Dusk | 5.84 | HC |
| SRR5110457 | panicle | Dawn + 21h | 4.78 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.48 | HC |
| SRR1633182 | panicle | WT | 21.29 | HC |
| SRR1633185 | panicle | WT | 27.26 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.09 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.06 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 5.11 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.33 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 8.85 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 8.56 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 6.04 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 5.85 | HC |
| SRR5126155 | root | "mock,7_days" | 5.11 | HC |
| SRR5126157 | root | "mock,7_days" | 7.88 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 6.79 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 8.95 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 6.39 | HC |
| SRR5126165 | root | "mock,14_days" | 6.53 | HC |
| SRR5126167 | root | "mock,14_days" | 4.63 | HC |
| SRR5126169 | root | "mock,14_days" | 5.34 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 10.31 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 7.02 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 10.78 | HC |
| SRR1213695 | root | wt | 17.54 | HC |
| SRR4947482 | root | Al | 3.66 | HC |
| SRR1740435 | root_differentiation_zone | wt | 3.92 | HC |
| SRR1740436 | root_differentiation_zone | wt | 5.40 | HC |
| SRR6441554 | seedling | wild_type | 4.09 | HC |
| SRR6441555 | seedling | wild_type | 4.08 | HC |
| SRR2154086 | seedling | wt | 8.31 | HC |
| SRR2154082 | seedling | wt | 7.52 | HC |
| SRR2154083 | seedling | wt | 4.43 | HC |
| SRR2154084 | seedling | wt | 4.52 | HC |
| SRR2154085 | seedling | wt | 5.04 | HC |
| SRR2154087 | seedling | wt | 7.21 | HC |
| SRR3098742 | seedling | wt | 3.21 | HC |
| SRR3098743 | seedling | wt | 3.52 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.37 | HC |
| SRR2857720 | seedling | drought_stress_1h | 5.28 | HC |
| SRR2857721 | seedling | drought_stress_6h | 7.86 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 6.76 | HC |
| SRR1944583 | seedling | no_treatment | 5.76 | HC |
| SRR358791 | seedling | wt | 14.42 | HC |
| SRR358792 | seedling | wt | 17.44 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 5.27 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 6.97 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.99 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 6.97 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 6.96 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 9.81 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 10.07 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 10.94 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 10.21 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 8.56 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 8.75 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.00 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.12 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 9.19 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 10.16 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 12.73 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 16.64 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 12.62 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 13.40 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 9.71 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 10.70 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 11.56 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.95 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 7.29 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 8.30 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 7.16 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 9.18 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 6.37 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 9.72 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 6.75 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 4.02 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.32 | HC |