| SRR4457252 | 2nd_leaf | DAH12 | 5.32 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 5.71 | HC |
| SRR358796 | callus | wt | 10.68 | HC |
| SRR358798 | callus | wt | 14.27 | HC |
| SRR6320473 | carpel | wt | 46.02 | HC |
| SRR6320498 | carpel | wt | 28.71 | HC |
| SRR5560727 | caryopsis | wild_type | 12.35 | HC |
| SRR5560728 | caryopsis | wild_type | 24.83 | HC |
| SRR5560729 | caryopsis | wild_type | 23.37 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 22.96 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 186.52 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 103.83 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 140.81 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 374.46 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 12.87 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 15.84 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 23.54 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.65 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 15.56 | HC |
| SRR4457231 | flag_leaf | DAH4 | 7.79 | HC |
| SRR4457232 | flag_leaf | DAH4 | 5.26 | HC |
| SRR4457233 | flag_leaf | DAH4 | 6.06 | HC |
| SRR4457234 | flag_leaf | DAH12 | 5.55 | HC |
| SRR4457235 | flag_leaf | DAH12 | 4.77 | HC |
| SRR4457236 | flag_leaf | DAH12 | 7.14 | HC |
| SRR4457237 | flag_leaf | DAH20 | 5.71 | HC |
| SRR4457238 | flag_leaf | DAH20 | 6.77 | HC |
| SRR4457239 | flag_leaf | DAH20 | 5.35 | HC |
| SRR1213690 | flower | wt(flower buds) | 6.93 | HC |
| SRR1213691 | flower | wt | 17.83 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 3.47 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 10.25 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 4.49 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 5.98 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 5.71 | HC |
| SRR6502100 | leaf | control | 10.34 | HC |
| SRR6502101 | leaf | control | 5.72 | HC |
| SRR6502102 | leaf | control | 5.17 | HC |
| SRR5856927 | leaf | control | 9.05 | HC |
| SRR5856928 | leaf | control | 15.30 | HC |
| SRR5856929 | leaf | control | 14.24 | HC |
| SRR5856930 | leaf | salt | 9.99 | HC |
| SRR5856931 | leaf | salt | 4.67 | HC |
| SRR5856932 | leaf | salt | 3.90 | HC |
| SRR5856933 | leaf | control | 11.35 | HC |
| SRR5856934 | leaf | control | 7.96 | HC |
| SRR5856935 | leaf | control | 4.69 | HC |
| SRR5856936 | leaf | salt | 7.02 | HC |
| SRR5856937 | leaf | salt | 8.87 | HC |
| SRR5856938 | leaf | salt | 4.99 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 41.45 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 28.32 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 45.16 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 11.35 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 11.65 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 36.97 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 39.57 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 29.51 | HC |
| SRR5110429 | panicle | Dawn | 32.12 | HC |
| SRR5110430 | panicle | Dawn | 38.24 | HC |
| SRR5110431 | panicle | Dawn | 32.16 | HC |
| SRR5110432 | panicle | Dawn | 34.98 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 67.33 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 43.34 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 27.46 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 44.46 | HC |
| SRR5110437 | panicle | Dawn + 7h | 72.51 | HC |
| SRR5110438 | panicle | Dawn + 7h | 45.41 | HC |
| SRR5110439 | panicle | Dawn + 7h | 54.44 | HC |
| SRR5110440 | panicle | Dawn + 7h | 50.67 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 26.48 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 72.99 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 74.10 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 51.36 | HC |
| SRR5110445 | panicle | Dusk | 24.11 | HC |
| SRR5110446 | panicle | Dusk | 72.56 | HC |
| SRR5110447 | panicle | Dusk | 58.45 | HC |
| SRR5110448 | panicle | Dusk | 53.66 | HC |
| SRR5110449 | panicle | Dawn + 14h | 43.43 | HC |
| SRR5110450 | panicle | Dawn + 14h | 42.50 | HC |
| SRR5110451 | panicle | Dawn + 14h | 41.61 | HC |
| SRR5110452 | panicle | Dawn + 14h | 49.94 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 60.38 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 40.92 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 62.11 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 50.19 | HC |
| SRR5110457 | panicle | Dawn + 21h | 45.10 | HC |
| SRR5110458 | panicle | Dawn + 21h | 37.01 | HC |
| SRR5110459 | panicle | Dawn + 21h | 34.16 | HC |
| SRR5110460 | panicle | Dawn + 21h | 28.22 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.63 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 3.25 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 8.30 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 7.91 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 11.36 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 20.70 | HC |
| SRR4947482 | root | Al | 5.74 | HC |
| SRR1740434 | root_differentiation_zone | wt | 12.34 | HC |
| SRR1740435 | root_differentiation_zone | wt | 4.08 | HC |
| SRR1740431 | root_elongation_zone | wt | 6.01 | HC |
| SRR2154082 | seedling | wt | 9.90 | HC |
| SRR2154083 | seedling | wt | 18.38 | HC |
| SRR2154084 | seedling | wt | 13.26 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.01 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.88 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 14.24 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.14 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 9.33 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 8.56 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 10.45 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 25.79 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 18.91 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 17.01 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 4.11 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 5.83 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 5.87 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 7.53 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 7.37 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.64 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 119.83 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 120.00 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 78.57 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 77.54 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 85.29 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 97.58 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 4.90 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 4.58 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 6.31 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.98 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.76 | HC |