| SRR358795 | callus | wt | 14.22 | HC |
| SRR358796 | callus | wt | 18.91 | HC |
| SRR358797 | callus | wt | 12.72 | HC |
| SRR358798 | callus | wt | 12.70 | HC |
| SRR5560727 | caryopsis | wild_type | 8.82 | HC |
| SRR5560728 | caryopsis | wild_type | 9.93 | HC |
| SRR5560729 | caryopsis | wild_type | 8.90 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 6.01 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 11.35 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 10.07 | HC |
| SRR2338866 | endosprem | control | 17.52 | HC |
| SRR2338867 | endosprem | control | 7.53 | HC |
| SRR2338868 | endosprem | high_temperature | 13.76 | HC |
| SRR2338869 | endosprem | high_temperature | 14.08 | HC |
| SRR976168 | flag_leaf | wild_type | 8.65 | HC |
| SRR1213690 | flower | wt(flower buds) | 13.28 | HC |
| SRR1213691 | flower | wt | 12.53 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.65 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 13.85 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 11.81 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 13.46 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 13.56 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 13.48 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 11.26 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 14.88 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 13.27 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 7.22 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 11.41 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 9.64 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 19.84 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 11.23 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 12.71 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 11.33 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 12.22 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 8.28 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 10.35 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 15.22 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 13.05 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.50 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 11.84 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 13.70 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 8.85 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 12.18 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 15.59 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 11.80 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.60 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 14.48 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 13.84 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 12.92 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 14.78 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 9.45 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 10.47 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 7.31 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 10.50 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 12.28 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 10.21 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 11.75 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 10.50 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 12.28 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 10.19 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 11.74 | HC |
| SRR1761528 | leaf | drought | 10.50 | HC |
| SRR1761529 | leaf | drought | 12.28 | HC |
| SRR1761530 | leaf | control | 10.24 | HC |
| SRR1761531 | leaf | control | 11.73 | HC |
| SRR504365 | leaf | wt | 15.47 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.68 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.11 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.46 | HC |
| SRR6417968 | leaf | H2O_control | 4.59 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 11.88 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 10.99 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 28.24 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 29.53 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 12.55 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 15.80 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 27.52 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 27.87 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 11.94 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 31.90 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 13.40 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 30.89 | HC |
| SRR8611900 | leaf | Non-inoculated | 5.84 | HC |
| SRR8611901 | leaf | Non-inoculated | 7.13 | HC |
| SRR8611902 | leaf | Non-inoculated | 7.87 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 5.37 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 5.46 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 4.97 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 14.38 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 14.47 | HC |
| SRR1213692 | leaf | wt | 10.89 | HC |
| SRR1213693 | leaf | wt | 13.91 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 6.98 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 9.24 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 12.01 | HC |
| SRR6502100 | leaf | control | 11.85 | HC |
| SRR6502101 | leaf | control | 10.83 | HC |
| SRR6502102 | leaf | control | 11.50 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 24.71 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 16.18 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 9.71 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 4.56 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 6.57 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 7.50 | HC |
| SRR8582888 | panicle | AM | 3.46 | HC |
| SRR8582889 | panicle | AM | 2.47 | HC |
| SRR8582891 | panicle | PM | 12.68 | HC |
| SRR8582892 | panicle | PM | 9.13 | HC |
| SRR8582893 | panicle | PM | 13.29 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 12.10 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 15.68 | HC |
| SRR5126147 | root | "mock,1_day" | 5.05 | HC |
| SRR5126148 | root | "mock,1_day" | 4.59 | HC |
| SRR5126149 | root | "mock,1_day" | 6.93 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.98 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 6.36 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 7.16 | HC |
| SRR5126153 | root | "mock,7_days" | 7.65 | HC |
| SRR5126155 | root | "mock,7_days" | 6.79 | HC |
| SRR5126157 | root | "mock,7_days" | 8.45 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 6.06 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.26 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 8.30 | HC |
| SRR5126165 | root | "mock,14_days" | 8.55 | HC |
| SRR5126167 | root | "mock,14_days" | 5.10 | HC |
| SRR5126169 | root | "mock,14_days" | 10.51 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 9.97 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 8.63 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 9.01 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 10.27 | HC |
| SRR1213694 | root | wt | 20.10 | HC |
| SRR1213695 | root | wt | 12.94 | HC |
| SRR6502103 | root | 100 mM NaCl | 14.89 | HC |
| SRR6502104 | root | 100 mM NaCl | 17.36 | HC |
| SRR6502105 | root | 100 mM NaCl | 18.63 | HC |
| SRR6502106 | root | control | 11.67 | HC |
| SRR6502107 | root | control | 13.25 | HC |
| SRR6502108 | root | control | 16.35 | HC |
| SRR1740434 | root_differentiation_zone | wt | 15.11 | HC |
| SRR1740435 | root_differentiation_zone | wt | 10.89 | HC |
| SRR1740436 | root_differentiation_zone | wt | 11.23 | HC |
| SRR1740431 | root_elongation_zone | wt | 16.43 | HC |
| SRR1740432 | root_elongation_zone | wt | 13.34 | HC |
| SRR1740433 | root_elongation_zone | wt | 16.96 | HC |
| SRR1740428 | root_meristematic_zone | wt | 27.19 | HC |
| SRR1740429 | root_meristematic_zone | wt | 30.45 | HC |
| SRR1740430 | root_meristematic_zone | wt | 27.99 | HC |
| SRR6441554 | seedling | wild_type | 7.06 | HC |
| SRR6441555 | seedling | wild_type | 6.99 | HC |
| SRR2154086 | seedling | wt | 17.97 | HC |
| SRR3098741 | seedling | wt | 3.42 | HC |
| SRR3098742 | seedling | wt | 3.60 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.28 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 9.56 | HC |
| SRR1944583 | seedling | no_treatment | 15.67 | HC |
| SRR358791 | seedling | wt | 14.84 | HC |
| SRR358792 | seedling | wt | 14.21 | HC |
| SRR358793 | seedling | wt | 18.57 | HC |
| SRR358794 | seedling | wt | 13.83 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 4.52 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 6.05 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.45 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 9.07 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 16.32 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 16.57 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 21.21 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 16.42 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 15.01 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 20.07 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 11.47 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 14.05 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 10.71 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 11.57 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 12.83 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 11.75 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 5.17 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.86 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.31 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.78 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.54 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.10 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.91 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 8.71 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.49 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 8.86 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.64 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.42 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.06 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.67 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.54 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.81 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.65 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.32 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 7.19 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 8.85 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 24.67 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 29.23 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 31.01 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 18.13 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 22.85 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 27.83 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 23.09 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 30.23 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 20.37 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 31.33 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 29.52 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 19.26 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 17.06 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 29.02 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 25.09 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 22.05 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 19.34 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 28.25 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 27.09 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 27.15 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 11.42 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 8.78 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 12.29 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 12.07 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 11.85 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 10.16 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 16.85 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 13.08 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 21.59 | HC |