| SRR4457249 | 2nd_leaf | DAH4 | 22.08 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 20.09 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 16.69 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 52.04 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 49.99 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 36.64 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 143.60 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 94.73 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 79.43 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 99.99 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 101.55 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 42.99 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 80.50 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 107.85 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 67.19 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 149.24 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 70.77 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 235.21 | HC |
| SRR3745125 | anther | wt | 7.86 | HC |
| SRR3745126 | anther | wt | 11.04 | HC |
| SRR3745127 | anther | wt | 12.38 | HC |
| SRR6320473 | carpel | wt | 21.01 | HC |
| SRR6320498 | carpel | wt | 23.07 | HC |
| SRR5560727 | caryopsis | wild_type | 12.50 | HC |
| SRR5560728 | caryopsis | wild_type | 5.63 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 4.39 | HC |
| SRR7265400 | coleoptile | 2dA | 4.99 | HC |
| SRR7265401 | coleoptile | 2dA | 5.44 | HC |
| SRR7265402 | coleoptile | 2dA | 5.43 | HC |
| SRR7265406 | coleoptile | 3dA | 8.36 | HC |
| SRR7265407 | coleoptile | 3dA | 7.34 | HC |
| SRR7265408 | coleoptile | 3dA | 7.92 | HC |
| SRR7265412 | coleoptile | 4dA | 37.81 | HC |
| SRR7265413 | coleoptile | 4dA | 51.78 | HC |
| SRR7265414 | coleoptile | 4dA | 39.84 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 10.06 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 7.47 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 7.79 | HC |
| SRR7265373 | embryo | dry seed 0 h | 14.51 | HC |
| SRR7265374 | embryo | dry seed 0 h | 18.32 | HC |
| SRR7265375 | embryo | dry seed 0 h | 5.00 | HC |
| SRR7265376 | embryo | 1hA | 13.19 | HC |
| SRR7265377 | embryo | 1hA | 16.11 | HC |
| SRR7265378 | embryo | 1hA | 22.38 | HC |
| SRR7265379 | embryo | 1hN | 11.77 | HC |
| SRR7265380 | embryo | 1hN | 9.85 | HC |
| SRR7265381 | embryo | 1hN | 16.77 | HC |
| SRR7265382 | embryo | 3hA | 12.17 | HC |
| SRR7265383 | embryo | 3hA | 18.09 | HC |
| SRR7265384 | embryo | 3hA | 15.10 | HC |
| SRR7265385 | embryo | 3hN | 9.75 | HC |
| SRR7265386 | embryo | 3hN | 8.12 | HC |
| SRR7265387 | embryo | 3hN | 13.13 | HC |
| SRR2338866 | endosprem | control | 26.03 | HC |
| SRR2338867 | endosprem | control | 13.25 | HC |
| SRR2338868 | endosprem | high_temperature | 4.07 | HC |
| SRR2338869 | endosprem | high_temperature | 4.03 | HC |
| SRR4457231 | flag_leaf | DAH4 | 23.02 | HC |
| SRR4457232 | flag_leaf | DAH4 | 27.09 | HC |
| SRR4457233 | flag_leaf | DAH4 | 28.77 | HC |
| SRR4457234 | flag_leaf | DAH12 | 55.00 | HC |
| SRR4457235 | flag_leaf | DAH12 | 58.79 | HC |
| SRR4457236 | flag_leaf | DAH12 | 45.73 | HC |
| SRR4457237 | flag_leaf | DAH20 | 121.01 | HC |
| SRR4457238 | flag_leaf | DAH20 | 132.37 | HC |
| SRR4457239 | flag_leaf | DAH20 | 115.79 | HC |
| SRR4457240 | flag_leaf | DAH28 | 161.18 | HC |
| SRR4457241 | flag_leaf | DAH28 | 164.64 | HC |
| SRR4457242 | flag_leaf | DAH28 | 115.48 | HC |
| SRR4457243 | flag_leaf | DAH36 | 106.31 | HC |
| SRR4457244 | flag_leaf | DAH36 | 57.11 | HC |
| SRR4457245 | flag_leaf | DAH36 | 76.64 | HC |
| SRR4457246 | flag_leaf | DAH44 | 210.91 | HC |
| SRR4457247 | flag_leaf | DAH44 | 138.04 | HC |
| SRR4457248 | flag_leaf | DAH44 | 226.12 | HC |
| SRR1213690 | flower | wt(flower buds) | 5.13 | HC |
| SRR8060835 | leaf | wild_type | 9.56 | HC |
| SRR8060836 | leaf | wild_type | 15.79 | HC |
| SRR8060837 | leaf | wild_type | 10.13 | HC |
| SRR8240818 | leaf | wild_type | 2.24 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 8.17 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.55 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 11.62 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 11.67 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 12.79 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 12.10 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 11.49 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 13.69 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 12.02 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.39 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.37 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 9.42 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 12.65 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.03 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 12.28 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 11.94 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 14.01 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 19.43 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.96 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.37 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.72 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 11.09 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.82 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 10.10 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 10.75 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 13.05 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 15.76 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 19.83 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 15.65 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 10.26 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 14.88 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 12.22 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 7.68 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 6.66 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 6.01 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 11.50 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 11.62 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 20.41 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 23.01 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 11.49 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 11.62 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 20.41 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 23.01 | HC |
| SRR1761528 | leaf | drought | 11.49 | HC |
| SRR1761529 | leaf | drought | 11.62 | HC |
| SRR1761530 | leaf | control | 20.41 | HC |
| SRR1761531 | leaf | control | 23.01 | HC |
| SRR504365 | leaf | wt | 12.60 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 14.69 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 11.54 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.38 | HC |
| SRR6417967 | leaf | H2O_control | 19.40 | HC |
| SRR6417968 | leaf | H2O_control | 22.39 | HC |
| SRR6417969 | leaf | H2O_control | 8.73 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 51.18 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 54.50 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 25.52 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 15.23 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 43.47 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 29.50 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 42.54 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 38.67 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 25.72 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 48.00 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 34.63 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 17.22 | HC |
| SRR8611900 | leaf | Non-inoculated | 6.73 | HC |
| SRR8611901 | leaf | Non-inoculated | 6.95 | HC |
| SRR8611902 | leaf | Non-inoculated | 8.28 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 8.02 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 9.98 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 8.17 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.91 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 6.54 | HC |
| SRR1213692 | leaf | wt | 9.51 | HC |
| SRR1213693 | leaf | wt | 16.77 | HC |
| SRR6502100 | leaf | control | 6.89 | HC |
| SRR6502101 | leaf | control | 5.22 | HC |
| SRR5856927 | leaf | control | 10.97 | HC |
| SRR5856928 | leaf | control | 18.43 | HC |
| SRR5856929 | leaf | control | 28.16 | HC |
| SRR5856930 | leaf | salt | 41.89 | HC |
| SRR5856931 | leaf | salt | 41.89 | HC |
| SRR5856932 | leaf | salt | 62.06 | HC |
| SRR5856933 | leaf | control | 15.10 | HC |
| SRR5856934 | leaf | control | 14.22 | HC |
| SRR5856935 | leaf | control | 29.62 | HC |
| SRR5856936 | leaf | salt | 34.84 | HC |
| SRR5856937 | leaf | salt | 45.99 | HC |
| SRR5856938 | leaf | salt | 29.69 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 10.74 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 8.04 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 10.83 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 7.91 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 19.10 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 15.46 | HC |
| SRR6168973 | leaf | none (control) | 8.76 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 11.13 | HC |
| SRR6168979 | leaf | none (control) | 32.59 | HC |
| SRR6168980 | leaf | none (control) | 25.13 | HC |
| SRR6168981 | leaf | none (control) | 70.12 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 72.53 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 145.81 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 102.17 | HC |
| SRR8582889 | panicle | AM | 2.21 | HC |
| SRR8582890 | panicle | AM | 2.77 | HC |
| SRR5110429 | panicle | Dawn | 11.99 | HC |
| SRR5110430 | panicle | Dawn | 21.61 | HC |
| SRR5110431 | panicle | Dawn | 14.73 | HC |
| SRR5110432 | panicle | Dawn | 4.16 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 11.94 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 7.15 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 6.92 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 10.70 | HC |
| SRR5110437 | panicle | Dawn + 7h | 7.30 | HC |
| SRR5110438 | panicle | Dawn + 7h | 6.79 | HC |
| SRR5110439 | panicle | Dawn + 7h | 17.12 | HC |
| SRR5110440 | panicle | Dawn + 7h | 7.81 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 7.17 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 6.36 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 8.80 | HC |
| SRR5110445 | panicle | Dusk | 7.98 | HC |
| SRR5110446 | panicle | Dusk | 7.77 | HC |
| SRR5110447 | panicle | Dusk | 7.61 | HC |
| SRR5110448 | panicle | Dusk | 6.01 | HC |
| SRR5110449 | panicle | Dawn + 14h | 8.78 | HC |
| SRR5110450 | panicle | Dawn + 14h | 7.77 | HC |
| SRR5110451 | panicle | Dawn + 14h | 6.61 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.52 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 5.34 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.34 | HC |
| SRR5110458 | panicle | Dawn + 21h | 8.47 | HC |
| SRR5110459 | panicle | Dawn + 21h | 5.65 | HC |
| SRR5110460 | panicle | Dawn + 21h | 11.98 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 4.92 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 8.61 | HC |
| SRR1633182 | panicle | WT | 24.07 | HC |
| SRR1633185 | panicle | WT | 43.97 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 12.41 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 14.73 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 8.65 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 8.38 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.91 | HC |
| SRR5126155 | root | "mock,7_days" | 6.15 | HC |
| SRR5126157 | root | "mock,7_days" | 9.62 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 7.75 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 9.00 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 6.45 | HC |
| SRR5126167 | root | "mock,14_days" | 7.24 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 6.80 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 9.89 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 5.18 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 3.21 | HC |
| SRR1213694 | root | wt | 27.46 | HC |
| SRR1213695 | root | wt | 18.83 | HC |
| SRR4947482 | root | Al | 3.93 | HC |
| SRR4947490 | root | Al | 4.69 | HC |
| SRR4947498 | root | Al | 6.28 | HC |
| SRR4947507 | root | Al | 8.54 | HC |
| SRR6502106 | root | control | 4.72 | HC |
| SRR1740434 | root_differentiation_zone | wt | 6.74 | HC |
| SRR1740435 | root_differentiation_zone | wt | 4.30 | HC |
| SRR1740436 | root_differentiation_zone | wt | 7.27 | HC |
| SRR1740431 | root_elongation_zone | wt | 4.73 | HC |
| SRR1740433 | root_elongation_zone | wt | 3.82 | HC |
| SRR6441554 | seedling | wild_type | 47.73 | HC |
| SRR6441555 | seedling | wild_type | 23.92 | HC |
| SRR2154082 | seedling | wt | 9.89 | HC |
| SRR2154083 | seedling | wt | 11.78 | HC |
| SRR2154085 | seedling | wt | 6.48 | HC |
| SRR2154087 | seedling | wt | 4.43 | HC |
| SRR3098741 | seedling | wt | 3.07 | HC |
| SRR2857720 | seedling | drought_stress_1h | 12.49 | HC |
| SRR2857721 | seedling | drought_stress_6h | 21.46 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 101.58 | HC |
| SRR1944583 | seedling | no_treatment | 15.36 | HC |
| SRR358794 | seedling | wt | 14.76 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.68 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 106.60 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 115.94 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 128.14 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 55.27 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 91.75 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 72.99 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 37.62 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 36.38 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 37.46 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 30.70 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 45.08 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 39.44 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.07 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.20 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.85 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.60 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 4.88 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 8.43 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 8.43 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 24.79 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 26.83 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 7.13 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 8.58 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 13.85 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 9.66 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 10.01 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 8.55 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 7.51 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 4.23 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.80 | HC |