| SRR358797 | callus | wt | 10.62 | HC |
| SRR358798 | callus | wt | 11.13 | HC |
| SRR6320473 | carpel | wt | 38.09 | HC |
| SRR6320498 | carpel | wt | 38.07 | HC |
| SRR5560728 | caryopsis | wild_type | 5.49 | HC |
| SRR5560729 | caryopsis | wild_type | 10.95 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 10.63 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 11.20 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 7.09 | HC |
| SRR4947495 | root | control | 35.97 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 10.72 | HC |
| SRR7265400 | coleoptile | 2dA | 6.35 | HC |
| SRR7265401 | coleoptile | 2dA | 6.69 | HC |
| SRR7265402 | coleoptile | 2dA | 7.19 | HC |
| SRR7265403 | coleoptile | 2dN | 10.77 | HC |
| SRR7265404 | coleoptile | 2dN | 7.67 | HC |
| SRR7265405 | coleoptile | 2dN | 7.30 | HC |
| SRR7265406 | coleoptile | 3dA | 4.14 | HC |
| SRR7265407 | coleoptile | 3dA | 4.50 | HC |
| SRR7265408 | coleoptile | 3dA | 3.05 | HC |
| SRR7265409 | coleoptile | 3dN | 4.85 | HC |
| SRR7265411 | coleoptile | 3dN | 3.89 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 5.07 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 6.19 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 17.53 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 12.12 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 23.22 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 16.41 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 17.21 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 19.69 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 14.75 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 9.35 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 21.99 | HC |
| SRR7265373 | embryo | dry seed 0 h | 5.85 | HC |
| SRR7265374 | embryo | dry seed 0 h | 5.70 | HC |
| SRR7265375 | embryo | dry seed 0 h | 2.35 | HC |
| SRR7265376 | embryo | 1hA | 4.46 | HC |
| SRR7265378 | embryo | 1hA | 4.26 | HC |
| SRR7265379 | embryo | 1hN | 6.59 | HC |
| SRR7265380 | embryo | 1hN | 5.20 | HC |
| SRR7265381 | embryo | 1hN | 6.02 | HC |
| SRR7265382 | embryo | 3hA | 5.38 | HC |
| SRR7265383 | embryo | 3hA | 5.09 | HC |
| SRR7265385 | embryo | 3hN | 5.23 | HC |
| SRR7265386 | embryo | 3hN | 4.89 | HC |
| SRR7265387 | embryo | 3hN | 5.04 | HC |
| SRR7265388 | embryo | 12hA | 15.52 | HC |
| SRR7265389 | embryo | 12hA | 12.58 | HC |
| SRR7265390 | embryo | 12hA | 12.84 | HC |
| SRR7265391 | embryo | 12hN | 13.32 | HC |
| SRR7265392 | embryo | 12hN | 10.99 | HC |
| SRR7265393 | embryo | 12hN | 10.31 | HC |
| SRR7265394 | embryo | 24hA | 12.56 | HC |
| SRR7265395 | embryo | 24hA | 12.75 | HC |
| SRR7265396 | embryo | 24hA | 13.87 | HC |
| SRR7265397 | embryo | 24hN | 14.40 | HC |
| SRR7265398 | embryo | 24hN | 9.99 | HC |
| SRR7265399 | embryo | 24hN | 12.69 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.88 | HC |
| SRR1213691 | flower | wt | 5.37 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 8.72 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 6.57 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 6.69 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 7.21 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.15 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.95 | HC |
| SRR5856927 | leaf | control | 6.27 | HC |
| SRR5856928 | leaf | control | 6.69 | HC |
| SRR5856929 | leaf | control | 7.16 | HC |
| SRR5856930 | leaf | salt | 28.41 | HC |
| SRR5856931 | leaf | salt | 28.12 | HC |
| SRR5856932 | leaf | salt | 25.67 | HC |
| SRR5856933 | leaf | control | 13.71 | HC |
| SRR5856934 | leaf | control | 12.39 | HC |
| SRR5856935 | leaf | control | 15.47 | HC |
| SRR5856936 | leaf | salt | 39.99 | HC |
| SRR5856937 | leaf | salt | 37.81 | HC |
| SRR5856938 | leaf | salt | 36.80 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 27.40 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 12.52 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 27.00 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 15.21 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 22.90 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 16.45 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 17.80 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 11.95 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 15.72 | HC |
| SRR6168973 | leaf | none (control) | 13.84 | HC |
| SRR6168974 | leaf | none (control) | 17.07 | HC |
| SRR6168975 | leaf | none (control) | 11.19 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 24.77 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 25.75 | HC |
| SRR6168981 | leaf | none (control) | 3.17 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 3.42 | HC |
| SRR5110429 | panicle | Dawn | 24.57 | HC |
| SRR5110430 | panicle | Dawn | 27.64 | HC |
| SRR5110431 | panicle | Dawn | 21.70 | HC |
| SRR5110432 | panicle | Dawn | 17.33 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 20.14 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 16.84 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 13.81 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 20.19 | HC |
| SRR5110437 | panicle | Dawn + 7h | 15.54 | HC |
| SRR5110438 | panicle | Dawn + 7h | 20.36 | HC |
| SRR5110439 | panicle | Dawn + 7h | 18.11 | HC |
| SRR5110440 | panicle | Dawn + 7h | 22.93 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 13.88 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 14.31 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 14.75 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 21.81 | HC |
| SRR5110445 | panicle | Dusk | 13.28 | HC |
| SRR5110446 | panicle | Dusk | 22.16 | HC |
| SRR5110447 | panicle | Dusk | 21.76 | HC |
| SRR5110448 | panicle | Dusk | 32.39 | HC |
| SRR5110449 | panicle | Dawn + 14h | 19.13 | HC |
| SRR5110450 | panicle | Dawn + 14h | 14.59 | HC |
| SRR5110451 | panicle | Dawn + 14h | 16.54 | HC |
| SRR5110452 | panicle | Dawn + 14h | 19.68 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 12.83 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 10.02 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 13.92 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 22.83 | HC |
| SRR5110457 | panicle | Dawn + 21h | 13.25 | HC |
| SRR5110458 | panicle | Dawn + 21h | 11.43 | HC |
| SRR5110459 | panicle | Dawn + 21h | 20.18 | HC |
| SRR5110460 | panicle | Dawn + 21h | 15.63 | HC |
| SRR1633182 | panicle | WT | 15.16 | HC |
| SRR1633185 | panicle | WT | 19.53 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 4.69 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.71 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 18.55 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 13.84 | HC |
| SRR5126148 | root | "mock,1_day" | 5.63 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 6.57 | HC |
| SRR5126169 | root | "mock,14_days" | 4.64 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.02 | HC |
| SRR4947478 | root | control | 16.14 | HC |
| SRR4947479 | root | control | 19.26 | HC |
| SRR4947482 | root | Al | 18.92 | HC |
| SRR4947483 | root | Al | 23.87 | HC |
| SRR4947484 | root | Al | 5.73 | HC |
| SRR4947485 | root | Al | 5.95 | HC |
| SRR4947487 | root | control | 22.02 | HC |
| SRR4947488 | root | control | 5.77 | HC |
| SRR4947489 | root | control | 6.78 | HC |
| SRR4947490 | root | Al | 21.43 | HC |
| SRR4947491 | root | Al | 38.43 | HC |
| SRR4947493 | root | Al | 5.62 | HC |
| SRR4947494 | root | control | 25.24 | HC |
| SRR4947497 | root | control | 7.93 | HC |
| SRR4947498 | root | Al | 50.96 | HC |
| SRR4947499 | root | Al | 35.66 | HC |
| SRR4947500 | root | Al | 7.66 | HC |
| SRR4947501 | root | Al | 11.82 | HC |
| SRR4947502 | root | control | 29.25 | HC |
| SRR4947503 | root | control | 31.51 | HC |
| SRR4947504 | root | control | 9.63 | HC |
| SRR4947505 | root | control | 6.68 | HC |
| SRR4947506 | root | Al | 20.71 | HC |
| SRR4947507 | root | Al | 54.12 | HC |
| SRR4947508 | root | Al | 6.78 | HC |
| SRR4947509 | root | Al | 6.87 | HC |
| SRR6502091 | root | 100 mM NaCl | 6.86 | HC |
| SRR6502092 | root | 100 mM NaCl | 6.57 | HC |
| SRR6502093 | root | 100 mM NaCl | 8.80 | HC |
| SRR6502095 | root | control | 5.94 | HC |
| SRR6502105 | root | 100 mM NaCl | 4.61 | HC |
| SRR1740435 | root_differentiation_zone | wt | 4.38 | HC |
| SRR1740436 | root_differentiation_zone | wt | 6.55 | HC |
| SRR1740431 | root_elongation_zone | wt | 15.76 | HC |
| SRR1740432 | root_elongation_zone | wt | 12.13 | HC |
| SRR1740433 | root_elongation_zone | wt | 16.67 | HC |
| SRR1740428 | root_meristematic_zone | wt | 13.96 | HC |
| SRR1740429 | root_meristematic_zone | wt | 10.37 | HC |
| SRR1740430 | root_meristematic_zone | wt | 14.67 | HC |
| SRR6441554 | seedling | wild_type | 3.80 | HC |
| SRR2154086 | seedling | wt | 5.73 | HC |
| SRR2154082 | seedling | wt | 28.68 | HC |
| SRR2154083 | seedling | wt | 33.84 | HC |
| SRR2154084 | seedling | wt | 55.34 | HC |
| SRR2154085 | seedling | wt | 7.37 | HC |
| SRR2154087 | seedling | wt | 8.34 | HC |
| SRR2857721 | seedling | drought_stress_6h | 4.66 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.83 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.52 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.12 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.53 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.15 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 33.29 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 31.63 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 31.79 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 57.85 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 41.52 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 53.60 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 47.92 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 36.16 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 38.46 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 30.62 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 29.03 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 33.27 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 45.84 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 43.77 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 45.49 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 43.04 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 49.74 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 40.74 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 50.19 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 42.08 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 43.83 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 51.42 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 65.59 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 9.89 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 11.81 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 8.27 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 10.35 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 17.79 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 15.64 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 14.72 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 24.44 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 21.77 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 23.09 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 18.03 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 17.40 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 17.60 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 18.35 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 14.08 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 18.89 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 16.00 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 17.19 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 16.76 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 17.70 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 18.53 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 13.62 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 15.52 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 17.31 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 16.36 | HC |